Variant report

Variant	rs11607927
Chromosome Location	chr11:121421969-121421970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:121421962-121422562	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121405326..121406874-chr11:121420837..121422474,2	MCF-7	breast:

Variant related genes	Relation type
SORL1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11218340	0.90[LWK][hapmap];0.83[MKK][hapmap]
rs11218351	0.83[MKK][hapmap]
rs11600231	0.82[YRI][hapmap]
rs11601559	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121395400-121424600	Weak transcription	Gastric	stomach
4	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:121396800-121425400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
8	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:121404600-121437200	Weak transcription	Lung	lung
10	chr11:121405600-121437400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:121406200-121423400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:121409800-121423800	Strong transcription	Liver	Liver
14	chr11:121410000-121424600	Weak transcription	Ovary	ovary
15	chr11:121411800-121433600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:121412800-121435200	Weak transcription	Small Intestine	intestine
17	chr11:121413600-121429400	Weak transcription	Left Ventricle	heart
18	chr11:121414000-121433600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:121415800-121424200	Weak transcription	Stomach Mucosa	stomach
21	chr11:121416000-121424600	Weak transcription	Pancreas	Pancrea
22	chr11:121416200-121422000	Weak transcription	Fetal Brain Male	brain
23	chr11:121416200-121422200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:121416200-121429200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:121416400-121423400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:121416400-121427400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr11:121416400-121433600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:121416600-121427200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
31	chr11:121416800-121425400	Weak transcription	Colonic Mucosa	Colon
32	chr11:121417000-121423400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:121417000-121424600	Weak transcription	Brain Anterior Caudate	brain
34	chr11:121417000-121426600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:121417000-121426600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:121417000-121427600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:121417200-121426600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:121417600-121425600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:121417600-121433400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:121417800-121427400	Weak transcription	Aorta	Aorta
43	chr11:121417800-121434000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:121417800-121439000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:121418000-121426600	Weak transcription	Brain Angular Gyrus	brain
46	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:121418400-121425600	Weak transcription	Fetal Stomach	stomach
48	chr11:121418600-121423000	Weak transcription	Fetal Intestine Small	intestine
49	chr11:121418600-121423600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:121418600-121423600	Weak transcription	Fetal Lung	lung

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