Variant report

Variant	rs11218351
Chromosome Location	chr11:121453707-121453708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10892756	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs10892757	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218340	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218344	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218345	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11218346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218349	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218352	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604897	1.00[CEU][hapmap]
rs11605969	1.00[CHD][hapmap];0.86[GIH][hapmap]
rs11607927	0.83[MKK][hapmap]
rs73595249	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv527072	chr11:121448090-121486552	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34768	chr11:121452651-121534938	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
3	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:121431000-121466400	Weak transcription	Ovary	ovary
5	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:121440600-121485000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:121442200-121456800	Weak transcription	Esophagus	oesophagus
8	chr11:121443000-121455000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:121443400-121464600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:121443800-121456800	Weak transcription	Lung	lung
11	chr11:121443800-121458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:121443800-121461600	Weak transcription	Pancreas	Pancrea
13	chr11:121445000-121454600	Strong transcription	Fetal Intestine Large	intestine
14	chr11:121448400-121461200	Weak transcription	Gastric	stomach
15	chr11:121448800-121495600	Weak transcription	Stomach Mucosa	stomach
16	chr11:121449600-121457200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:121449800-121465800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:121450000-121460200	Weak transcription	Brain Germinal Matrix	brain
19	chr11:121450200-121453800	Weak transcription	Aorta	Aorta
20	chr11:121450200-121453800	Weak transcription	HMEC	breast
21	chr11:121450200-121455200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:121450200-121456400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:121450200-121458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:121450200-121460800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:121450200-121461600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:121450200-121461800	Weak transcription	Fetal Brain Male	brain
27	chr11:121450600-121460600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:121451000-121457800	Weak transcription	Fetal Lung	lung
29	chr11:121451000-121462600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:121451200-121454200	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:121451200-121455600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:121451200-121456800	Weak transcription	Fetal Brain Female	brain
33	chr11:121451200-121461600	Weak transcription	Fetal Kidney	kidney
34	chr11:121451200-121464000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:121451200-121488200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:121451400-121459000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:121451400-121469600	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:121451400-121470000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:121451600-121453800	Enhancers	Brain Substantia Nigra	brain
40	chr11:121451600-121453800	Genic enhancers	GM12878-XiMat	blood
41	chr11:121451600-121454200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:121451600-121454800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:121451600-121455800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:121451600-121458400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:121451800-121454200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:121451800-121455200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:121451800-121455600	Strong transcription	NHEK	skin
48	chr11:121451800-121457000	Genic enhancers	Fetal Thymus	thymus
49	chr11:121452000-121453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:121452000-121460000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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