Variant report

Variant	rs11218345
Chromosome Location	chr11:121438607-121438608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892756	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10892757	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218340	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11218344	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11218346	1.00[CEU][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11218347	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218349	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11218351	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11218352	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11604897	1.00[CEU][hapmap]
rs3781832	0.82[CEU][hapmap]
rs73595249	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
7	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:121417800-121439000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:121424800-121441800	Weak transcription	Fetal Brain Male	brain
12	chr11:121425000-121442600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:121425400-121448000	Weak transcription	Stomach Mucosa	stomach
15	chr11:121426600-121439200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:121427200-121442800	Weak transcription	Pancreas	Pancrea
17	chr11:121427800-121439200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:121428200-121441800	Weak transcription	Esophagus	oesophagus
19	chr11:121428200-121451400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:121430000-121439800	Strong transcription	Dnd41	blood
21	chr11:121430800-121443000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:121430800-121446200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:121431000-121442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:121431000-121466400	Weak transcription	Ovary	ovary
25	chr11:121432800-121450000	Weak transcription	Aorta	Aorta
26	chr11:121434400-121451200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:121434600-121439000	Strong transcription	Primary B cells from cord blood	blood
28	chr11:121434600-121439600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:121434600-121453200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:121434800-121439200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:121434800-121451800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:121435200-121446200	Weak transcription	Fetal Kidney	kidney
33	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:121435400-121442200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:121436200-121439000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:121436200-121439800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:121436200-121442200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr11:121436200-121450400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:121436600-121439000	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr11:121436600-121439800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:121437000-121439000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:121437200-121439000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:121437200-121439000	Genic enhancers	Liver	Liver
44	chr11:121437200-121439000	Strong transcription	Thymus	Thymus
45	chr11:121437200-121440000	Strong transcription	Fetal Intestine Small	intestine
46	chr11:121437200-121440200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr11:121437400-121439000	Strong transcription	Fetal Intestine Large	intestine
48	chr11:121437400-121439000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:121437400-121439200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:121437400-121439600	Strong transcription	Fetal Brain Female	brain

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