Variant report

Variant	rs11218340
Chromosome Location	chr11:121431354-121431355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10892756	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10892757	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218344	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218345	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11218346	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11218347	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218349	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218351	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11218352	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11604897	1.00[CEU][hapmap]
rs11605969	1.00[CHD][hapmap];0.82[GIH][hapmap]
rs11607597	1.00[YRI][hapmap]
rs11607927	0.90[LWK][hapmap];0.83[MKK][hapmap]
rs3781832	0.82[CEU][hapmap]
rs73595249	0.98[EUR][1000 genomes]
rs9665907	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11218340	MIR142	trans	lymphoblastoid	seeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
6	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:121404600-121437200	Weak transcription	Lung	lung
8	chr11:121405600-121437400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:121411800-121433600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:121412800-121435200	Weak transcription	Small Intestine	intestine
12	chr11:121414000-121433600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:121416400-121433600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
17	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:121417600-121433400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:121417800-121434000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:121417800-121439000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:121420600-121432600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:121420600-121433200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:121420600-121433400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:121420600-121433600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:121421000-121433000	Strong transcription	Primary B cells from cord blood	blood
28	chr11:121422400-121437600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:121422800-121437200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:121423000-121432200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:121423200-121433200	Strong transcription	Fetal Thymus	thymus
32	chr11:121423400-121431600	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr11:121423400-121432800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:121423400-121432800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:121423400-121434000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:121424200-121433400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:121424600-121436400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr11:121424800-121441800	Weak transcription	Fetal Brain Male	brain
39	chr11:121425000-121442600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:121425400-121448000	Weak transcription	Stomach Mucosa	stomach
42	chr11:121425800-121437600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:121426000-121433400	Strong transcription	Thymus	Thymus
44	chr11:121426000-121433600	Strong transcription	NHEK	skin
45	chr11:121426400-121432800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:121426600-121431800	Strong transcription	Brain Hippocampus Middle	brain
47	chr11:121426600-121439200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:121426800-121432400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr11:121427200-121442800	Weak transcription	Pancreas	Pancrea
50	chr11:121427400-121437200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links