Variant report

Variant	rs35045093
Chromosome Location	chr7:127738471-127738472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127737543..127740197-chr7:127740336..127742903,2	MCF-7	breast:
2	chr7:127734758..127738581-chr7:127762335..127766176,3	K562	blood:
3	chr7:127735954..127738632-chr7:127744138..127745884,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12706825	0.88[EUR][1000 genomes]
rs35361134	0.88[EUR][1000 genomes]
rs4731395	0.92[EUR][1000 genomes]
rs62484016	0.91[EUR][1000 genomes]
rs6467159	0.88[EUR][1000 genomes]
rs6467160	0.88[EUR][1000 genomes]
rs6467162	0.88[EUR][1000 genomes]
rs6467163	0.88[EUR][1000 genomes]
rs6953698	0.88[EUR][1000 genomes]
rs6954161	0.88[EUR][1000 genomes]
rs6954389	0.87[EUR][1000 genomes]
rs759710	0.88[EUR][1000 genomes]
rs7780024	0.88[EUR][1000 genomes]
rs7792971	0.88[EUR][1000 genomes]
rs7793071	0.88[EUR][1000 genomes]
rs7803045	0.88[EUR][1000 genomes]
rs7803473	0.88[EUR][1000 genomes]
rs7811971	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127707800-127742200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:127713800-127738800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:127717200-127738600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:127717600-127738800	Strong transcription	Liver	Liver
5	chr7:127724000-127739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:127724600-127743600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:127725800-127739000	Strong transcription	Fetal Muscle Trunk	muscle
8	chr7:127726000-127743600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:127726200-127739200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:127726200-127739400	Strong transcription	Fetal Intestine Small	intestine
11	chr7:127726600-127739400	Strong transcription	Fetal Stomach	stomach
12	chr7:127727200-127740000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:127729200-127739600	Strong transcription	Fetal Intestine Large	intestine
14	chr7:127730000-127742800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:127730400-127740600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:127730400-127743800	Weak transcription	HSMM	muscle
17	chr7:127730800-127738800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:127731000-127739000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:127731400-127743600	Weak transcription	Brain Substantia Nigra	brain
20	chr7:127731800-127743600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:127732000-127738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:127732200-127743600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:127732800-127743600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:127733000-127739400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:127733000-127739400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:127733000-127740600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:127733200-127743600	Weak transcription	Primary B cells from cord blood	blood
28	chr7:127733200-127743800	Weak transcription	Small Intestine	intestine
29	chr7:127733400-127740400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:127733600-127743400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:127733600-127743600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:127733800-127740400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:127733800-127743400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:127734000-127738600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:127734000-127740400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:127734000-127741200	Weak transcription	Fetal Lung	lung
37	chr7:127734200-127743600	Weak transcription	NHDF-Ad	bronchial
38	chr7:127734400-127744000	Weak transcription	A549	lung
39	chr7:127734400-127748200	Weak transcription	Dnd41	blood
40	chr7:127734600-127739200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:127734600-127740000	Weak transcription	HSMMtube	muscle
42	chr7:127734600-127743600	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:127734600-127743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:127734800-127740000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:127734800-127740400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:127734800-127743600	Weak transcription	Brain Anterior Caudate	brain
47	chr7:127734800-127743600	Weak transcription	HUVEC	blood vessel
48	chr7:127735000-127739800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:127735000-127740000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:127735000-127740600	Weak transcription	Primary T cells fromperipheralblood	blood

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