Variant report

Variant	rs62484016
Chromosome Location	chr7:127747058-127747059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127745939..127747505-chr7:127754984..127756729,2	K562	blood:
2	chr7:127740635..127743022-chr7:127746178..127748843,2	MCF-7	breast:
3	chr7:127746979..127749085-chr7:127751994..127753543,2	K562	blood:
4	chr7:127231985..127234573-chr7:127746550..127748851,2	K562	blood:

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12706825	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35045093	0.91[EUR][1000 genomes]
rs35361134	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4731395	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467159	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467160	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467162	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467163	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6953698	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954161	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954389	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs759710	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7780024	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7792971	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7793071	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7803045	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7803473	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7811971	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127734400-127748200	Weak transcription	Dnd41	blood
2	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
3	chr7:127744800-127747200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:127744800-127748600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:127744800-127748800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr7:127744800-127753200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:127744800-127753400	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:127745000-127747800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:127745800-127747800	Weak transcription	Spleen	Spleen
10	chr7:127745800-127749000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr7:127746400-127753400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:127746600-127748400	Enhancers	Primary T cells from cord blood	blood
13	chr7:127746600-127748400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:127746600-127748800	Enhancers	Primary B cells from cord blood	blood
15	chr7:127746800-127747400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:127746800-127747600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
17	chr7:127746800-127748400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:127746800-127748400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr7:127746800-127748600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:127746800-127749000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:127746800-127749000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr7:127747000-127747600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr7:127747000-127749200	Enhancers	Fetal Thymus	thymus
24	chr7:127747000-127753400	Enhancers	Thymus	Thymus

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