Variant report

Variant	rs35053204
Chromosome Location	chr4:129149078-129149079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129148539..129151049-chr4:129208191..129211640,3	MCF-7	breast:
2	chr4:129148695..129150886-chr4:129155942..129157749,2	MCF-7	breast:
3	chr4:129148431..129150686-chr4:129162614..129165468,2	MCF-7	breast:
4	chr4:129147470..129151366-chr4:129195142..129198204,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164040	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12510308	0.85[AFR][1000 genomes]
rs12511648	0.84[AFR][1000 genomes]
rs1948506	0.84[AFR][1000 genomes]
rs4975271	0.84[EUR][1000 genomes]
rs7688852	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129108200-129149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129123000-129149400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:129128200-129149200	Weak transcription	Aorta	Aorta
4	chr4:129130800-129149600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:129133600-129149400	Weak transcription	Pancreas	Pancrea
6	chr4:129134400-129149200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:129135000-129149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:129144200-129151400	Weak transcription	Lung	lung
9	chr4:129145000-129149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:129145000-129150000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:129146000-129149200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:129146600-129149400	Weak transcription	NH-A	brain
13	chr4:129146600-129149600	Weak transcription	Fetal Heart	heart
14	chr4:129146800-129149400	Weak transcription	NHLF	lung
15	chr4:129147200-129149200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:129148800-129149600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:129148800-129150000	Enhancers	HSMM	muscle
18	chr4:129148800-129151000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:129148800-129151000	Enhancers	Osteobl	bone
20	chr4:129149000-129149400	Enhancers	Duodenum Mucosa	Duodenum
21	chr4:129149000-129149800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:129149000-129149800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:129149000-129149800	Enhancers	Placenta	Placenta
24	chr4:129149000-129149800	Enhancers	HMEC	breast
25	chr4:129149000-129150000	Enhancers	HSMMtube	muscle
26	chr4:129149000-129150400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:129149000-129150400	Enhancers	Fetal Muscle Leg	muscle
28	chr4:129149000-129150600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:129149000-129150600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:129149000-129150800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:129149000-129150800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:129149000-129151000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:129149000-129151000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr4:129149000-129151200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr4:129149000-129151200	Enhancers	NHDF-Ad	bronchial

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