Variant report

Variant	rs35054792
Chromosome Location	chr19:45538705-45538706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:45538488-45539437	GM12878	blood:	n/a	n/a
2	POLR2A	chr19:45538662-45538880	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45537588..45539200-chr19:45539757..45542793,3	MCF-7	breast:

Variant related genes	Relation type
CLASRP	TF binding region
ENSG00000104859	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs36088840	1.00[AMR][1000 genomes]
rs7257087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449420	chr19:45523560-45626884	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45505200-45541800	Weak transcription	NHLF	lung
2	chr19:45505400-45542000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr19:45506000-45541800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr19:45506000-45541800	Weak transcription	Psoas Muscle	Psoas
5	chr19:45506200-45538800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:45506200-45541200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:45506200-45541800	Weak transcription	NHDF-Ad	bronchial
8	chr19:45512800-45541400	Weak transcription	Stomach Mucosa	stomach
9	chr19:45515400-45542000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:45520400-45542200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:45520600-45541600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:45522200-45541400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:45527800-45538800	Strong transcription	Fetal Intestine Small	intestine
14	chr19:45527800-45539000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr19:45527800-45539800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr19:45527800-45541200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr19:45527800-45541400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr19:45528200-45541200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr19:45528200-45541200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr19:45528200-45541400	Strong transcription	Fetal Stomach	stomach
21	chr19:45528400-45538800	Strong transcription	Lung	lung
22	chr19:45528400-45539200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr19:45528400-45539400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:45528400-45539400	Strong transcription	Liver	Liver
25	chr19:45528400-45540600	Strong transcription	Primary T cells from cord blood	blood
26	chr19:45528400-45541200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:45528400-45541400	Strong transcription	Placenta	Placenta
28	chr19:45528400-45541400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr19:45528600-45538800	Strong transcription	Adipose Nuclei	Adipose
30	chr19:45528600-45539600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr19:45528600-45539600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr19:45528600-45541400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr19:45528600-45541400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr19:45528800-45539400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:45529800-45541000	Strong transcription	Stomach Smooth Muscle	stomach
36	chr19:45530600-45539200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr19:45530600-45541200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr19:45530600-45541400	Strong transcription	Fetal Muscle Leg	muscle
39	chr19:45530600-45541800	Weak transcription	Hela-S3	cervix
40	chr19:45530800-45541600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr19:45531000-45541400	Weak transcription	Dnd41	blood
42	chr19:45531000-45542200	Weak transcription	HUVEC	blood vessel
43	chr19:45531800-45541400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr19:45532000-45541000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:45532600-45541400	Weak transcription	Brain Angular Gyrus	brain
46	chr19:45532800-45541000	Strong transcription	Spleen	Spleen
47	chr19:45532800-45541800	Weak transcription	Fetal Lung	lung
48	chr19:45533000-45541800	Weak transcription	Ovary	ovary
49	chr19:45533600-45539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr19:45533600-45540000	Strong transcription	Primary B cells from cord blood	blood

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