Variant report

Variant	rs36088840
Chromosome Location	chr19:45526032-45526033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35054792	1.00[AMR][1000 genomes]
rs7257087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912134	chr19:45395619-45528799	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3371318	chr19:45508161-45536776	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3449420	chr19:45523560-45626884	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45505200-45528600	Weak transcription	Gastric	stomach
2	chr19:45505200-45531800	Weak transcription	Small Intestine	intestine
3	chr19:45505200-45534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:45505200-45541800	Weak transcription	NHLF	lung
5	chr19:45505400-45542000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr19:45505800-45531800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr19:45506000-45532000	Weak transcription	NH-A	brain
8	chr19:45506000-45532200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:45506000-45532200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:45506000-45535800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:45506000-45535800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr19:45506000-45535800	Weak transcription	HMEC	breast
13	chr19:45506000-45537800	Weak transcription	HSMM	muscle
14	chr19:45506000-45541800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:45506000-45541800	Weak transcription	Psoas Muscle	Psoas
16	chr19:45506200-45530600	Weak transcription	Ovary	ovary
17	chr19:45506200-45532000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:45506200-45533800	Weak transcription	Brain Substantia Nigra	brain
19	chr19:45506200-45534200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr19:45506200-45536000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:45506200-45538800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:45506200-45541200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:45506200-45541800	Weak transcription	NHDF-Ad	bronchial
24	chr19:45506400-45528600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr19:45506400-45532200	Weak transcription	Thymus	Thymus
26	chr19:45506400-45532400	Weak transcription	Right Ventricle	heart
27	chr19:45511000-45534000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr19:45512200-45530800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:45512800-45531800	Weak transcription	NHEK	skin
30	chr19:45512800-45541400	Weak transcription	Stomach Mucosa	stomach
31	chr19:45514000-45532000	Weak transcription	Brain Anterior Caudate	brain
32	chr19:45515400-45542000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr19:45515600-45531400	Weak transcription	Pancreas	Pancrea
34	chr19:45517000-45532200	Weak transcription	Aorta	Aorta
35	chr19:45517200-45530600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr19:45517400-45528400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr19:45517400-45528400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr19:45517400-45530600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr19:45517400-45532000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr19:45517400-45532200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr19:45517600-45529200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr19:45517800-45534000	Weak transcription	Brain Hippocampus Middle	brain
43	chr19:45518800-45530600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr19:45519200-45528400	Weak transcription	Placenta	Placenta
45	chr19:45520200-45528400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr19:45520400-45542200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr19:45520600-45526200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr19:45520600-45528400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:45520600-45531800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr19:45520600-45532000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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