Variant report

Variant	rs35055112
Chromosome Location	chr2:187578087-187578088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187575138..187576648-chr2:187577435..187579069,2	K562	blood:
2	chr2:187571625..187574199-chr2:187577740..187579942,2	MCF-7	breast:
3	chr2:187575138..187577104-chr2:187577435..187579000,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11678190	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11683898	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685758	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12151442	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12615659	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12998294	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13001028	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13016261	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13027560	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13028817	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13030356	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13033579	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17334303	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17334422	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839123	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1839124	0.87[ASN][1000 genomes]
rs2084448	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2595375	0.96[EUR][1000 genomes]
rs34483988	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34521209	0.86[ASN][1000 genomes]
rs35251833	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35986780	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36117902	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3816386	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58644770	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6717512	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7419327	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7589470	0.83[ASN][1000 genomes]
rs7593018	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9789682	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs998972	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187560400-187579400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:187560600-187582200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:187560600-187584200	Weak transcription	Fetal Lung	lung
4	chr2:187567400-187581400	Weak transcription	Fetal Brain Female	brain
5	chr2:187570200-187578400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:187570600-187578800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:187573000-187578800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:187575000-187580000	Enhancers	Brain Angular Gyrus	brain
9	chr2:187576200-187582600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:187577000-187578200	Enhancers	Brain Anterior Caudate	brain
11	chr2:187577000-187580400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr2:187577000-187580600	Enhancers	Brain Substantia Nigra	brain
13	chr2:187577600-187579600	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:187577600-187580000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:187577600-187580200	Enhancers	Brain Hippocampus Middle	brain
16	chr2:187577600-187580400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:187577800-187580000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:187577800-187580000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:187577800-187580200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:187577800-187580400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:187577800-187580600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:187578000-187578800	Weak transcription	Aorta	Aorta
23	chr2:187578000-187579000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:187578000-187579400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:187578000-187583600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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