Variant report

Variant	rs35986780
Chromosome Location	chr2:187588880-187588881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11678190	0.91[EUR][1000 genomes]
rs11683898	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13006483	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13026081	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13030356	0.81[ASN][1000 genomes]
rs13033579	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17334422	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17406339	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17750683	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34483988	0.90[EUR][1000 genomes]
rs35055112	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36117902	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58644770	0.81[ASN][1000 genomes]
rs6717512	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7419327	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9333289	0.81[ASN][1000 genomes]
rs9333290	0.81[EUR][1000 genomes]
rs9789682	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs998972	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187584400-187589000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:187584400-187590400	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:187584600-187590200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:187584600-187590600	Weak transcription	Fetal Brain Female	brain
5	chr2:187584600-187591600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:187584600-187591800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:187584600-187596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:187587600-187589200	Weak transcription	Brain Anterior Caudate	brain
9	chr2:187587600-187590400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:187588000-187590400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:187588400-187589400	Enhancers	Fetal Brain Male	brain
12	chr2:187588400-187591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:187588600-187589600	Genic enhancers	Brain Substantia Nigra	brain
14	chr2:187588800-187589000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:187588800-187591000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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