Variant report

Variant	rs35064856
Chromosome Location	chr2:31146703-31146704
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59126417	1.00[AMR][1000 genomes]
rs61280236	1.00[AMR][1000 genomes]
rs61342531	1.00[AMR][1000 genomes]
rs73921180	1.00[AMR][1000 genomes]
rs73923381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:31124600-31146800	Weak transcription	NHEK	skin
3	chr2:31127400-31159600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:31130600-31152000	Weak transcription	Fetal Brain Female	brain
5	chr2:31132200-31146800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:31132200-31149000	Weak transcription	Spleen	Spleen
7	chr2:31134400-31155600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:31139400-31147600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:31141600-31160800	Weak transcription	Lung	lung
10	chr2:31142600-31152400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:31143600-31148200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:31144800-31147200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:31145000-31179800	Weak transcription	Esophagus	oesophagus
14	chr2:31146200-31147800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:31146400-31146800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:31146400-31147000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:31146400-31147400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:31146400-31147600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:31146400-31148000	Strong transcription	HMEC	breast
20	chr2:31146600-31146800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr2:31146600-31147800	Strong transcription	Brain Germinal Matrix	brain

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