Variant report

Variant	rs61280236
Chromosome Location	chr2:31158033-31158034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31157693..31159312-chr2:31174245..31177137,2	MCF-7	breast:
2	chr2:31152310..31154617-chr2:31157849..31160819,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35064856	1.00[AMR][1000 genomes]
rs59126417	1.00[AMR][1000 genomes]
rs61342531	1.00[AMR][1000 genomes]
rs73921180	1.00[AMR][1000 genomes]
rs73923381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:31127400-31159600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:31141600-31160800	Weak transcription	Lung	lung
4	chr2:31145000-31179800	Weak transcription	Esophagus	oesophagus
5	chr2:31146800-31159800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:31146800-31160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:31147000-31171000	Weak transcription	A549	lung
8	chr2:31147600-31213000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:31147800-31161000	Weak transcription	Brain Germinal Matrix	brain
10	chr2:31148400-31160600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:31149200-31160000	Weak transcription	NHEK	skin
12	chr2:31152200-31167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:31152400-31171200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:31152400-31173400	Weak transcription	Fetal Brain Female	brain
15	chr2:31152400-31191600	Weak transcription	HMEC	breast
16	chr2:31154600-31159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:31154800-31171200	Weak transcription	Primary B cells from cord blood	blood
18	chr2:31156000-31221400	Weak transcription	Pancreas	Pancrea
19	chr2:31156200-31170400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr2:31156400-31158400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:31156400-31160400	Weak transcription	Fetal Brain Male	brain
22	chr2:31156600-31160600	Weak transcription	Fetal Thymus	thymus
23	chr2:31156800-31158600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:31157200-31170800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:31157800-31158400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:31157800-31158800	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links