Variant report

Variant	rs35073181
Chromosome Location	chr12:105484372-105484373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10459164	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10459203	0.83[EUR][1000 genomes]
rs10459204	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10861334	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10861338	0.83[EUR][1000 genomes]
rs10861339	0.83[EUR][1000 genomes]
rs11112355	0.83[EUR][1000 genomes]
rs11112360	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11112363	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11112364	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12230762	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12823614	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036625	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2166143	0.84[EUR][1000 genomes]
rs34119882	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34384505	0.83[EUR][1000 genomes]
rs34891908	0.83[EUR][1000 genomes]
rs35132501	0.82[EUR][1000 genomes]
rs4964121	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105478800-105486200	Weak transcription	Right Atrium	heart
2	chr12:105483200-105485600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:105483200-105487000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:105483400-105484400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:105483400-105485400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:105483400-105485400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:105483400-105485600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:105483600-105484400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr12:105483600-105485200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:105483600-105485600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:105483800-105484800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:105484000-105484400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr12:105484000-105485400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:105484000-105485400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:105484000-105485400	Weak transcription	K562	blood
16	chr12:105484000-105485600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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