Variant report

Variant	rs12230762
Chromosome Location	chr12:105490149-105490150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105489815..105492601-chr12:105500035..105503276,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257999	Chromatin interaction
ENSG00000136051	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1014502	0.83[ASN][1000 genomes]
rs10431460	0.82[ASN][1000 genomes]
rs10459164	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10459203	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10459204	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1057110	0.80[ASN][1000 genomes]
rs10861334	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861338	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861339	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861359	0.82[ASN][1000 genomes]
rs11112355	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112360	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112363	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112364	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112369	0.81[ASN][1000 genomes]
rs11112372	0.81[ASN][1000 genomes]
rs11112375	0.81[ASN][1000 genomes]
rs11112376	0.82[ASN][1000 genomes]
rs11112379	0.82[ASN][1000 genomes]
rs11112388	0.82[ASN][1000 genomes]
rs11832489	0.82[ASN][1000 genomes]
rs12228093	0.80[ASN][1000 genomes]
rs12228948	0.82[ASN][1000 genomes]
rs12823614	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12830078	0.85[ASN][1000 genomes]
rs1373552	0.82[ASN][1000 genomes]
rs1444611	0.82[ASN][1000 genomes]
rs17036625	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2166143	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2272495	0.80[ASN][1000 genomes]
rs28549976	0.82[ASN][1000 genomes]
rs34075890	0.82[ASN][1000 genomes]
rs34119882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34384505	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34891908	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35073181	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35132501	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35462155	0.82[ASN][1000 genomes]
rs3817607	0.81[ASN][1000 genomes]
rs4964121	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4964335	0.81[ASN][1000 genomes]
rs4964336	0.81[ASN][1000 genomes]
rs4964338	0.82[ASN][1000 genomes]
rs55908437	0.85[ASN][1000 genomes]
rs56693261	0.82[ASN][1000 genomes]
rs73179994	0.82[ASN][1000 genomes]
rs7485364	0.82[ASN][1000 genomes]
rs755604	0.82[ASN][1000 genomes]
rs8015	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105487000-105493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:105488800-105490200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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