Variant report

Variant	rs35462155
Chromosome Location	chr12:105578863-105578864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1014502	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431460	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1057110	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1077896	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10861359	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861361	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1109433	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11112369	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112370	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112372	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112375	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112376	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112379	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112388	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112409	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11112412	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112415	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11112416	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11112421	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112423	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11112432	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11831854	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11832489	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834277	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12228093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12228948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12230762	0.82[ASN][1000 genomes]
rs12812433	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12815031	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12819309	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12830078	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1317955	0.91[EUR][1000 genomes]
rs1373552	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444611	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1470381	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2272495	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2293643	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2293644	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2464176	0.93[ASN][1000 genomes]
rs28549976	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34075890	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34119882	0.80[ASN][1000 genomes]
rs34983773	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35672903	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3736628	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3794222	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3794223	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3794224	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3794227	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3817607	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3829296	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4964125	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4964334	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4964335	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964336	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964338	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964339	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4964340	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4964342	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55908437	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56693261	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179994	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485364	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881279	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9919746	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv870352	chr12:105557770-105589263	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105522600-105586000	Weak transcription	Stomach Mucosa	stomach
2	chr12:105525400-105583200	Weak transcription	Fetal Heart	heart
3	chr12:105546800-105625200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:105556200-105583400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:105558200-105587200	Weak transcription	Psoas Muscle	Psoas
6	chr12:105558800-105615200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:105560800-105581800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr12:105561400-105598400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:105564000-105582200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:105568000-105589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:105568200-105581800	Weak transcription	Small Intestine	intestine
12	chr12:105568400-105581000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr12:105569600-105581000	Weak transcription	Hela-S3	cervix
14	chr12:105570000-105579000	Weak transcription	NHEK	skin
15	chr12:105570200-105579000	Weak transcription	Brain Angular Gyrus	brain
16	chr12:105570800-105579200	Weak transcription	HSMMtube	muscle
17	chr12:105571000-105581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:105571200-105579000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:105571400-105617800	Weak transcription	K562	blood
20	chr12:105572400-105579000	Weak transcription	NH-A	brain
21	chr12:105572600-105579200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:105573200-105579000	Weak transcription	GM12878-XiMat	blood
23	chr12:105573200-105579000	Weak transcription	HSMM	muscle
24	chr12:105576000-105580200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:105576000-105593200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr12:105576000-105595600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr12:105576400-105579600	Weak transcription	Fetal Brain Male	brain
28	chr12:105576400-105585600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:105576400-105606000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:105577000-105583800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:105577000-105607200	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr12:105577200-105584000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:105577200-105584000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:105577200-105587400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:105577200-105589400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr12:105577200-105592200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr12:105577400-105592800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:105577400-105593600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr12:105577400-105616200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:105577600-105589200	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr12:105577800-105579000	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr12:105577800-105579400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:105577800-105579800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:105577800-105579800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr12:105577800-105579800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr12:105577800-105579800	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr12:105577800-105579800	Strong transcription	Colon Smooth Muscle	Colon
48	chr12:105577800-105579800	ZNF genes & repeats	Fetal Lung	lung
49	chr12:105577800-105580000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:105577800-105580200	Strong transcription	Skeletal Muscle Male	skeletal muscle

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