Variant report

Variant	rs11112423
Chromosome Location	chr12:105639885-105639886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105605767..105607700-chr12:105638996..105640802,2	MCF-7	breast:
2	chr12:105627501..105631320-chr12:105637092..105641109,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136044	Chromatin interaction
ENSG00000235162	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1014502	0.85[EUR][1000 genomes]
rs10431460	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1057110	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1077896	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10861359	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10861361	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10861363	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10861367	0.82[AFR][1000 genomes]
rs1109433	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11112369	0.85[EUR][1000 genomes]
rs11112370	0.84[EUR][1000 genomes]
rs11112372	0.81[EUR][1000 genomes]
rs11112375	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11112376	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11112379	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11112388	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11112409	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11112412	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11112415	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11112416	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11112421	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11112432	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112433	0.97[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11112440	0.82[AFR][1000 genomes]
rs11831854	0.89[EUR][1000 genomes]
rs11832489	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11834277	0.84[EUR][1000 genomes]
rs12228093	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12228948	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12580027	0.82[AFR][1000 genomes]
rs12812433	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12815031	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12819309	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12819795	0.82[AFR][1000 genomes]
rs1317955	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1373552	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1444611	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1470381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2272495	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2293643	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2293644	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28549976	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34075890	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34983773	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35462155	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35672903	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3736628	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3794222	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3794223	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3794224	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3794227	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3817607	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3829296	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4964125	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4964334	0.81[EUR][1000 genomes]
rs4964335	0.85[EUR][1000 genomes]
rs4964336	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4964338	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4964339	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4964340	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4964342	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4964351	0.82[AFR][1000 genomes]
rs4964352	0.82[AFR][1000 genomes]
rs55908437	0.80[EUR][1000 genomes]
rs56693261	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179994	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7485364	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7485511	0.82[AFR][1000 genomes]
rs7485535	0.82[AFR][1000 genomes]
rs755604	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8015	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs881279	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9919746	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455704	chr12:105583877-105651356	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	nsv560053	chr12:105583877-105651356	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3429738	chr12:105638759-105642036	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links