Variant report

Variant	rs11112440
Chromosome Location	chr12:105665162-105665163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105660954..105663749-chr12:105664178..105665747,2	MCF-7	breast:
2	chr12:105653802..105657280-chr12:105663370..105665652,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10459165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778377	0.88[ASN][1000 genomes]
rs10778378	0.88[ASN][1000 genomes]
rs10778379	0.88[ASN][1000 genomes]
rs10861363	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861370	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861372	0.88[ASN][1000 genomes]
rs10861373	0.88[ASN][1000 genomes]
rs10861374	0.88[ASN][1000 genomes]
rs10861375	0.87[ASN][1000 genomes]
rs10861376	0.89[ASN][1000 genomes]
rs10861379	0.88[ASN][1000 genomes]
rs10861380	0.86[ASN][1000 genomes]
rs11112421	0.82[AFR][1000 genomes]
rs11112423	0.82[AFR][1000 genomes]
rs11112432	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11112433	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112442	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112443	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11112444	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11112446	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11112447	0.88[ASN][1000 genomes]
rs11112449	0.88[ASN][1000 genomes]
rs11112450	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12227922	0.86[ASN][1000 genomes]
rs12228258	0.88[ASN][1000 genomes]
rs12424651	0.86[ASN][1000 genomes]
rs12578428	0.88[ASN][1000 genomes]
rs12578730	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12579816	0.88[ASN][1000 genomes]
rs12580027	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12582119	0.88[ASN][1000 genomes]
rs12582382	0.88[ASN][1000 genomes]
rs12582412	0.88[ASN][1000 genomes]
rs12819795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34983773	0.82[AFR][1000 genomes]
rs4337137	0.91[ASN][1000 genomes]
rs4578495	0.86[ASN][1000 genomes]
rs4964128	0.81[ASN][1000 genomes]
rs4964129	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964347	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4964349	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964352	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4964353	0.94[ASN][1000 genomes]
rs4964354	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7132894	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7132958	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295178	0.88[ASN][1000 genomes]
rs7299570	0.86[ASN][1000 genomes]
rs7300350	0.88[ASN][1000 genomes]
rs7308679	0.88[ASN][1000 genomes]
rs73181849	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7484699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7485511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7485535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7487098	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105662800-105665600	Enhancers	NHDF-Ad	bronchial
4	chr12:105663200-105665400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:105663400-105665800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:105663800-105665200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr12:105664000-105666200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:105664200-105665200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:105664400-105665800	Weak transcription	NHEK	skin
10	chr12:105664600-105672200	Weak transcription	HSMM	muscle
11	chr12:105664800-105665200	Enhancers	Fetal Heart	heart
12	chr12:105665000-105666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:105665000-105674200	Weak transcription	Osteobl	bone

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