Variant report

Variant	rs7485511
Chromosome Location	chr12:105666169-105666170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105630089..105632839-chr12:105665320..105668612,3	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1014502	0.84[CEU][hapmap]
rs10459165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10778377	0.90[ASN][1000 genomes]
rs10778378	0.90[ASN][1000 genomes]
rs10778379	0.90[ASN][1000 genomes]
rs10861359	0.84[CEU][hapmap]
rs10861361	0.84[CEU][hapmap]
rs10861363	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10861367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861370	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861372	0.90[ASN][1000 genomes]
rs10861373	0.90[ASN][1000 genomes]
rs10861374	0.90[ASN][1000 genomes]
rs10861375	0.89[ASN][1000 genomes]
rs10861376	0.91[ASN][1000 genomes]
rs10861379	0.90[ASN][1000 genomes]
rs10861380	0.88[ASN][1000 genomes]
rs11112370	0.84[CEU][hapmap]
rs11112376	0.84[CEU][hapmap];0.84[MKK][hapmap];0.88[YRI][hapmap]
rs11112412	0.84[CEU][hapmap]
rs11112416	0.84[CEU][hapmap]
rs11112421	0.87[ASW][hapmap];0.84[CEU][hapmap];0.83[CHB][hapmap];0.93[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs11112423	0.82[AFR][1000 genomes]
rs11112432	0.87[ASW][hapmap];0.84[CEU][hapmap];0.83[CHB][hapmap];0.93[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs11112433	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11112440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112442	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112443	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112444	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11112446	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11112447	0.90[ASN][1000 genomes]
rs11112449	0.90[ASN][1000 genomes]
rs11112450	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11831854	0.84[CEU][hapmap]
rs12227922	0.88[ASN][1000 genomes]
rs12228258	0.90[ASN][1000 genomes]
rs12424651	0.88[ASN][1000 genomes]
rs12578428	0.90[ASN][1000 genomes]
rs12578730	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12579536	0.81[ASN][1000 genomes]
rs12579816	0.90[ASN][1000 genomes]
rs12580027	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12582119	0.90[ASN][1000 genomes]
rs12582382	0.90[ASN][1000 genomes]
rs12582412	0.90[ASN][1000 genomes]
rs12815031	0.83[CEU][hapmap]
rs12819795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317955	0.84[CEU][hapmap]
rs1373552	0.84[CEU][hapmap]
rs1444611	0.83[CEU][hapmap]
rs2272495	0.84[CEU][hapmap]
rs2293643	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs2293644	0.84[CEU][hapmap]
rs34983773	0.82[AFR][1000 genomes]
rs3736628	0.85[YRI][hapmap]
rs3794223	0.88[CEU][hapmap]
rs3817607	0.87[ASW][hapmap];0.84[CEU][hapmap];0.90[MKK][hapmap];0.88[YRI][hapmap]
rs4337137	0.92[ASN][1000 genomes]
rs4578495	0.88[ASN][1000 genomes]
rs4964129	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4964336	0.83[CEU][hapmap];0.88[YRI][hapmap]
rs4964347	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4964349	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4964351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4964352	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4964353	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4964354	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7132894	0.94[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7132958	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7295178	0.90[ASN][1000 genomes]
rs7299570	0.88[ASN][1000 genomes]
rs7300350	0.90[ASN][1000 genomes]
rs7308679	0.90[ASN][1000 genomes]
rs73181849	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7485535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7487098	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs755604	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs881279	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105664000-105666200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:105664600-105672200	Weak transcription	HSMM	muscle
5	chr12:105665000-105674200	Weak transcription	Osteobl	bone
6	chr12:105665200-105666200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:105665600-105674800	Weak transcription	NHDF-Ad	bronchial
8	chr12:105665800-105667800	Enhancers	NHEK	skin
9	chr12:105666000-105667800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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