Variant report

Variant	rs11112443
Chromosome Location	chr12:105676618-105676619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105626966..105630516-chr12:105673384..105677025,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136044	Chromatin interaction
ENSG00000235162	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10459165	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10778377	0.96[ASN][1000 genomes]
rs10778378	0.96[ASN][1000 genomes]
rs10778379	0.96[ASN][1000 genomes]
rs10861363	0.83[AMR][1000 genomes]
rs10861367	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10861370	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861372	0.96[ASN][1000 genomes]
rs10861373	0.96[ASN][1000 genomes]
rs10861374	0.96[ASN][1000 genomes]
rs10861375	0.95[ASN][1000 genomes]
rs10861376	0.95[ASN][1000 genomes]
rs10861379	0.96[ASN][1000 genomes]
rs10861380	0.94[ASN][1000 genomes]
rs11112433	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11112440	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11112442	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112444	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112446	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112447	0.96[ASN][1000 genomes]
rs11112449	0.96[ASN][1000 genomes]
rs11112450	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12227922	0.94[ASN][1000 genomes]
rs12228258	0.96[ASN][1000 genomes]
rs12424651	0.94[ASN][1000 genomes]
rs12578428	0.96[ASN][1000 genomes]
rs12578730	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12579536	0.90[ASN][1000 genomes]
rs12579816	0.96[ASN][1000 genomes]
rs12580027	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12582119	0.96[ASN][1000 genomes]
rs12582382	0.96[ASN][1000 genomes]
rs12582412	0.96[ASN][1000 genomes]
rs12819795	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1897482	0.87[ASN][1000 genomes]
rs4337137	0.90[ASN][1000 genomes]
rs4578495	0.94[ASN][1000 genomes]
rs4964129	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4964347	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4964349	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4964351	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4964352	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4964353	0.93[ASN][1000 genomes]
rs4964354	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7132894	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132958	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295178	0.96[ASN][1000 genomes]
rs7299570	0.94[ASN][1000 genomes]
rs7300350	0.96[ASN][1000 genomes]
rs7308679	0.96[ASN][1000 genomes]
rs73181849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7484699	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7485511	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7485535	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7487098	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105675800-105681200	Weak transcription	Stomach Mucosa	stomach
2	chr12:105676200-105681400	Weak transcription	HepG2	liver
3	chr12:105676400-105681400	Weak transcription	A549	lung

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