Variant report

Variant	rs10861376
Chromosome Location	chr12:105681186-105681187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10459165	0.89[ASN][1000 genomes]
rs10778377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10778378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10778379	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861367	0.89[ASN][1000 genomes]
rs10861370	0.92[ASN][1000 genomes]
rs10861372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861375	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861377	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10861378	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10861379	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861380	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112440	0.89[ASN][1000 genomes]
rs11112442	0.92[ASN][1000 genomes]
rs11112443	0.95[ASN][1000 genomes]
rs11112444	0.93[ASN][1000 genomes]
rs11112446	0.95[ASN][1000 genomes]
rs11112447	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112448	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11112449	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112450	0.95[ASN][1000 genomes]
rs12227922	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12228258	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12424651	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12578428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12578730	0.95[ASN][1000 genomes]
rs12579536	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12579816	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12580027	0.91[ASN][1000 genomes]
rs12582119	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12819795	0.89[ASN][1000 genomes]
rs1897482	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337137	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4578495	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4964129	0.89[ASN][1000 genomes]
rs4964347	0.87[ASN][1000 genomes]
rs4964349	0.89[ASN][1000 genomes]
rs4964351	0.89[ASN][1000 genomes]
rs4964352	0.93[ASN][1000 genomes]
rs4964353	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4964354	0.94[ASN][1000 genomes]
rs7132894	0.96[ASN][1000 genomes]
rs7132958	0.96[ASN][1000 genomes]
rs7294358	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7295178	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299570	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7300350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7308679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73181849	0.93[ASN][1000 genomes]
rs7484699	0.86[ASN][1000 genomes]
rs7485511	0.91[ASN][1000 genomes]
rs7485535	0.91[ASN][1000 genomes]
rs7487098	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3492286	chr12:105680848-105681708	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3511409	chr12:105680886-105681685	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3511412	chr12:105680897-105681633	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3492274	chr12:105680905-105681674	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3656	chr12:105680909-105681748	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3492241	chr12:105680914-105681669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3492252	chr12:105680917-105681633	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3511410	chr12:105680922-105681649	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3511411	chr12:105680926-105681647	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv826508	chr12:105680952-105681730	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3492263	chr12:105680967-105681604	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3511413	chr12:105680977-105681605	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3492297	chr12:105680981-105681603	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3511414	chr12:105680981-105681603	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3381379	chr12:105680987-105681708	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv16955	chr12:105680990-105681599	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105675800-105681200	Weak transcription	Stomach Mucosa	stomach
2	chr12:105676200-105681400	Weak transcription	HepG2	liver
3	chr12:105676400-105681400	Weak transcription	A549	lung

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