Variant report
| Variant | rs35074129 |
|---|---|
| Chromosome Location | chr22:30866471-30866472 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1131603 | 1.00[ASN][1000 genomes] |
| rs13053196 | 1.00[ASN][1000 genomes] |
| rs13056562 | 1.00[ASN][1000 genomes] |
| rs13058084 | 1.00[ASN][1000 genomes] |
| rs13058399 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13058535 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17730748 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17738020 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34102711 | 1.00[ASN][1000 genomes] |
| rs34318316 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34471369 | 1.00[ASN][1000 genomes] |
| rs34886169 | 1.00[ASN][1000 genomes] |
| rs34911581 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34964064 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35057984 | 1.00[ASN][1000 genomes] |
| rs35246430 | 1.00[ASN][1000 genomes] |
| rs35617977 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35765517 | 1.00[ASN][1000 genomes] |
| rs35960997 | 1.00[ASN][1000 genomes] |
| rs4449240 | 1.00[ASN][1000 genomes] |
| rs4820002 | 1.00[ASN][1000 genomes] |
| rs4820834 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4820840 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4823086 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4823087 | 1.00[ASN][1000 genomes] |
| rs67384221 | 1.00[ASN][1000 genomes] |
| rs67401267 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68042293 | 1.00[ASN][1000 genomes] |
| rs7292248 | 1.00[ASN][1000 genomes] |
| rs73168654 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829171 | chr22:30598030-31043578 | Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 3 | nsv459870 | chr22:30836313-30868418 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv588886 | chr22:30836313-30868418 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:30857800-30867600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr22:30858200-30866800 | Weak transcription | Liver | Liver |
| 3 | chr22:30866400-30866600 | Bivalent Enhancer | Primary T cells fromperipheralblood | blood |
