Variant report
| Variant | rs35246430 |
|---|---|
| Chromosome Location | chr22:30907993-30907994 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:30906993..30909808-chr22:30916517..30918667,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1131603 | 1.00[ASN][1000 genomes] |
| rs13053196 | 1.00[ASN][1000 genomes] |
| rs13056562 | 1.00[ASN][1000 genomes] |
| rs13058084 | 1.00[ASN][1000 genomes] |
| rs13058399 | 1.00[ASN][1000 genomes] |
| rs13058535 | 1.00[ASN][1000 genomes] |
| rs17730748 | 1.00[ASN][1000 genomes] |
| rs17738020 | 1.00[ASN][1000 genomes] |
| rs1807507 | 1.00[ASN][1000 genomes] |
| rs34102711 | 1.00[ASN][1000 genomes] |
| rs34318316 | 1.00[ASN][1000 genomes] |
| rs34471369 | 1.00[ASN][1000 genomes] |
| rs34886169 | 1.00[ASN][1000 genomes] |
| rs34911581 | 1.00[ASN][1000 genomes] |
| rs34964064 | 1.00[ASN][1000 genomes] |
| rs35057984 | 1.00[ASN][1000 genomes] |
| rs35074129 | 1.00[ASN][1000 genomes] |
| rs35617977 | 1.00[ASN][1000 genomes] |
| rs35765517 | 1.00[ASN][1000 genomes] |
| rs35960997 | 1.00[ASN][1000 genomes] |
| rs4449240 | 1.00[ASN][1000 genomes] |
| rs4820002 | 1.00[ASN][1000 genomes] |
| rs4820834 | 1.00[ASN][1000 genomes] |
| rs4820840 | 1.00[ASN][1000 genomes] |
| rs4823086 | 1.00[ASN][1000 genomes] |
| rs4823087 | 1.00[ASN][1000 genomes] |
| rs5753263 | 1.00[ASN][1000 genomes] |
| rs67384221 | 1.00[ASN][1000 genomes] |
| rs67401267 | 1.00[ASN][1000 genomes] |
| rs68042293 | 1.00[ASN][1000 genomes] |
| rs7292248 | 1.00[ASN][1000 genomes] |
| rs73168654 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829171 | chr22:30598030-31043578 | Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 3 | esv3413089 | chr22:30888110-30921604 | ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:30907600-30910000 | Weak transcription | HepG2 | liver |
