Variant report

Variant	rs35078022
Chromosome Location	chr12:41723032-41723033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11180828	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12366677	0.85[ASN][1000 genomes]
rs17573404	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34801048	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35952173	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41721200-41729600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:41721400-41726800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:41721400-41727000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:41721400-41727600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:41721400-41728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:41721600-41726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:41721600-41727000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:41721600-41727000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:41721600-41727000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:41721600-41727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:41721800-41725600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:41722600-41723200	Enhancers	Colon Smooth Muscle	Colon
13	chr12:41722600-41723400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr12:41722800-41723600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:41722800-41733000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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