Variant report

Variant	rs35952173
Chromosome Location	chr12:41720820-41720821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11180828	0.86[EUR][1000 genomes]
rs17573404	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34801048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35078022	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41719200-41721600	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:41719800-41721800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:41720000-41721200	Enhancers	Colon Smooth Muscle	Colon
4	chr12:41720200-41721400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:41720200-41721800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:41720600-41721200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:41720600-41721600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:41720800-41721200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr12:41720800-41721200	Enhancers	Rectal Smooth Muscle	rectum
10	chr12:41720800-41721400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:41720800-41721600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:41720800-41721600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr12:41720800-41721800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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