Variant report

Variant	rs35080860
Chromosome Location	chr6:35443835-35443836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35421073..35422894-chr6:35443794..35445610,2	K562	blood:
2	chr6:35441574..35443877-chr6:35520480..35522030,2	K562	blood:
3	chr6:35259275..35263852-chr6:35441869..35446640,5	K562	blood:
4	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
5	chr6:35412651..35414194-chr6:35442637..35444257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs45490693	1.00[ASN][1000 genomes]
rs56175055	1.00[ASN][1000 genomes]
rs56941839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745198	1.00[ASN][1000 genomes]
rs73745201	1.00[ASN][1000 genomes]
rs73745202	1.00[ASN][1000 genomes]
rs73746404	1.00[ASN][1000 genomes]
rs9658081	1.00[ASN][1000 genomes]
rs9658093	1.00[ASN][1000 genomes]
rs9658094	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
5	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35437600-35449200	Strong transcription	Aorta	Aorta
2	chr6:35437800-35446200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:35437800-35451000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:35438000-35455800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:35438200-35444200	Strong transcription	Thymus	Thymus
6	chr6:35438200-35458000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:35438400-35449600	Strong transcription	Gastric	stomach
8	chr6:35438800-35444200	Strong transcription	Brain Germinal Matrix	brain
9	chr6:35438800-35448200	Strong transcription	Right Ventricle	heart
10	chr6:35439200-35445000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:35439200-35447600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:35439200-35447600	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:35439200-35447800	Strong transcription	Colonic Mucosa	Colon
14	chr6:35439200-35448200	Strong transcription	Lung	lung
15	chr6:35439200-35452400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:35439200-35452600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:35439200-35453000	Weak transcription	Fetal Kidney	kidney
18	chr6:35439400-35452600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr6:35439800-35444200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:35439800-35444600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:35439800-35452600	Strong transcription	Fetal Intestine Small	intestine
22	chr6:35440000-35444200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:35440000-35452400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:35440200-35445000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:35440200-35447400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:35440200-35447600	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr6:35440200-35448200	Strong transcription	Ovary	ovary
28	chr6:35440200-35452200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:35440200-35452400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:35440200-35457200	Weak transcription	Psoas Muscle	Psoas
31	chr6:35440400-35446600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:35440400-35449400	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:35440400-35452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:35440400-35452400	Weak transcription	Hela-S3	cervix
35	chr6:35440400-35452600	Strong transcription	NHLF	lung
36	chr6:35440400-35452800	Strong transcription	Fetal Stomach	stomach
37	chr6:35440400-35453000	Strong transcription	Fetal Intestine Large	intestine
38	chr6:35440400-35455600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:35440600-35445600	Weak transcription	Dnd41	blood
40	chr6:35440600-35446800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:35440600-35448600	Strong transcription	Liver	Liver
42	chr6:35440600-35455800	Weak transcription	Primary B cells from cord blood	blood
43	chr6:35440800-35445000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:35440800-35452600	Weak transcription	NHDF-Ad	bronchial
45	chr6:35441000-35444000	Strong transcription	NHEK	skin
46	chr6:35441200-35445000	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:35441200-35446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:35441200-35446400	Strong transcription	Pancreas	Pancrea
49	chr6:35441200-35448200	Weak transcription	K562	blood
50	chr6:35441200-35452600	Weak transcription	A549	lung

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