Variant report

Variant	rs73745201
Chromosome Location	chr6:35336302-35336303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35309244..35311800-chr6:35334738..35336722,3	MCF-7	breast:
2	chr6:35333771..35336611-chr6:35358813..35361070,2	MCF-7	breast:
3	chr6:35335918..35340012-chr6:35342665..35344421,4	K562	blood:
4	chr6:35335380..35337947-chr6:35338128..35341057,2	MCF-7	breast:
5	chr6:35335918..35339865-chr6:35340596..35344421,5	K562	blood:
6	chr6:35334905..35337136-chr6:35354617..35357561,2	K562	blood:
7	chr6:35334952..35336985-chr6:35437820..35439683,2	MCF-7	breast:
8	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs35080860	1.00[ASN][1000 genomes]
rs45490693	1.00[ASN][1000 genomes]
rs56175055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56941839	1.00[ASN][1000 genomes]
rs73745198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746404	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9658081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658093	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658094	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
2	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
3	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:35329200-35337800	Weak transcription	Ovary	ovary
6	chr6:35329600-35338400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:35331200-35336400	Weak transcription	Thymus	Thymus
8	chr6:35331200-35337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:35331400-35337600	Weak transcription	Colonic Mucosa	Colon
11	chr6:35331400-35337800	Weak transcription	Aorta	Aorta
12	chr6:35331400-35337800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:35331400-35339200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:35331600-35337800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:35331600-35337800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:35331600-35338000	Weak transcription	Gastric	stomach
17	chr6:35331600-35345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:35331600-35345400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:35332000-35337800	Weak transcription	Brain Anterior Caudate	brain
20	chr6:35332200-35338000	Weak transcription	Brain Angular Gyrus	brain
21	chr6:35334000-35336600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:35334200-35339800	Enhancers	K562	blood
23	chr6:35334800-35339400	Enhancers	Psoas Muscle	Psoas
24	chr6:35335000-35337600	Enhancers	HSMMtube	muscle
25	chr6:35335000-35337800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:35335000-35339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:35335200-35336600	Enhancers	Left Ventricle	heart
28	chr6:35335200-35336600	Enhancers	Lung	lung
29	chr6:35335200-35337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:35335200-35337800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35335400-35336400	Enhancers	Esophagus	oesophagus
32	chr6:35335400-35336600	Enhancers	Right Atrium	heart
33	chr6:35335400-35337400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:35335400-35337800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:35335400-35337800	Enhancers	NH-A	brain
36	chr6:35335400-35338600	Enhancers	HepG2	liver
37	chr6:35335400-35339400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:35335400-35339800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:35335400-35339800	Enhancers	Adipose Nuclei	Adipose
40	chr6:35335400-35340000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr6:35335600-35336400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:35335600-35337200	Enhancers	HSMM	muscle
43	chr6:35335600-35337600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:35335600-35337600	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr6:35335600-35337800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:35335600-35337800	Enhancers	NHDF-Ad	bronchial
47	chr6:35335600-35337800	Enhancers	NHEK	skin
48	chr6:35335600-35338200	Weak transcription	Fetal Stomach	stomach
49	chr6:35335600-35338800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:35335600-35339000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links