The 2.0 version of rSNPBase

Variant report

Variant rs35085196
Chromosome Location chr3:143712210-143712211
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:143692800-143714200 Weak transcription Small Intestine intestine
2 chr3:143693400-143713800 Weak transcription H9 Cell Line embryonic stem cell
3 chr3:143694400-143718800 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr3:143694400-143719400 Weak transcription Hela-S3 cervix
5 chr3:143695600-143716800 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr3:143697000-143713400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr3:143697000-143722800 Weak transcription Stomach Smooth Muscle stomach
8 chr3:143697000-143729200 Weak transcription Aorta Aorta
9 chr3:143697200-143723000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:143697200-143727800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr3:143698400-143721200 Weak transcription Fetal Kidney kidney
12 chr3:143699000-143717000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr3:143699200-143737600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr3:143699400-143714000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr3:143700400-143720400 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr3:143702400-143717000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr3:143702600-143727400 Weak transcription Pancreas Pancrea
18 chr3:143703200-143720600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr3:143703400-143719400 Weak transcription Placenta Placenta
20 chr3:143704400-143716200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr3:143704600-143712400 Weak transcription Gastric stomach
22 chr3:143704600-143719600 Weak transcription Colon Smooth Muscle Colon
23 chr3:143704600-143725800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr3:143705600-143722600 Weak transcription Esophagus oesophagus
25 chr3:143706000-143715000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr3:143706400-143712600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr3:143706400-143728000 Weak transcription Fetal Stomach stomach
28 chr3:143706600-143714000 Weak transcription Fetal Muscle Trunk muscle
29 chr3:143706600-143722600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr3:143706800-143713200 Weak transcription Thymus Thymus
31 chr3:143706800-143725000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr3:143707000-143722600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr3:143707400-143714200 Weak transcription Brain Anterior Caudate brain
34 chr3:143707400-143714200 Weak transcription Brain Substantia Nigra brain
35 chr3:143707400-143714400 Weak transcription Brain Cingulate Gyrus brain
36 chr3:143707400-143714600 Weak transcription Brain Angular Gyrus brain
37 chr3:143707800-143712600 Strong transcription Primary T helper cells fromperipheralblood blood
38 chr3:143707800-143713400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr3:143708000-143713600 Weak transcription Brain Hippocampus Middle brain
40 chr3:143708000-143729200 Weak transcription Ovary ovary
41 chr3:143708800-143713400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr3:143708800-143716200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr3:143708800-143717200 Weak transcription NHEK skin
44 chr3:143708800-143720400 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr3:143708800-143729200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr3:143709000-143714000 Weak transcription Primary T cells fromperipheralblood blood
47 chr3:143709000-143714000 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr3:143709000-143714200 Weak transcription Brain Inferior Temporal Lobe brain
49 chr3:143709000-143716800 Weak transcription Duodenum Mucosa Duodenum
50 chr3:143709000-143720600 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015