Variant report

Variant	rs35629416
Chromosome Location	chr3:143748424-143748425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1025984	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10513235	0.94[EUR][1000 genomes]
rs11914731	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11924473	0.81[ASN][1000 genomes]
rs13067695	0.99[ASN][1000 genomes]
rs13068298	0.99[ASN][1000 genomes]
rs13078840	0.94[EUR][1000 genomes]
rs13081286	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086088	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16854772	0.95[EUR][1000 genomes]
rs16854816	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16854819	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16854884	0.99[ASN][1000 genomes]
rs16854886	0.99[ASN][1000 genomes]
rs1867608	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867609	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1898265	0.90[ASN][1000 genomes]
rs1961542	0.99[ASN][1000 genomes]
rs1979910	0.97[EUR][1000 genomes]
rs2011080	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2164554	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370171	0.99[ASN][1000 genomes]
rs34372603	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34683397	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35067746	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35085196	0.97[EUR][1000 genomes]
rs35193361	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35309714	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35649888	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35788195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35796781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35877644	0.93[EUR][1000 genomes]
rs35885310	0.90[ASN][1000 genomes]
rs35887108	0.99[ASN][1000 genomes]
rs35959290	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527375	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4561830	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4611822	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4613453	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4616638	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58251824	0.81[ASN][1000 genomes]
rs59768870	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60367530	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60676654	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62268458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62269895	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440210	0.97[EUR][1000 genomes]
rs6440212	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6766544	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6766685	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6767236	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6769910	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6778627	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6779321	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6783089	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6791078	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6795008	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6796460	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7611326	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7634145	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637912	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7639366	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7642551	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642774	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7646187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649614	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7650145	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7650172	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs920159	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9755502	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9755515	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143747000-143748600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:143747000-143749400	Enhancers	Brain Hippocampus Middle	brain
3	chr3:143747200-143748600	Enhancers	Primary B cells from cord blood	blood
4	chr3:143747200-143748600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:143747200-143748800	Enhancers	Brain Substantia Nigra	brain
6	chr3:143747600-143750800	Weak transcription	Ovary	ovary
7	chr3:143748000-143748600	Enhancers	Brain Angular Gyrus	brain
8	chr3:143748000-143748600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:143748200-143748600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:143748200-143749200	Enhancers	GM12878-XiMat	blood
11	chr3:143748400-143748800	Weak transcription	Brain Anterior Caudate	brain
12	chr3:143748400-143750000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:143748400-143750200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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