Variant report
Variant | rs7649614 |
---|---|
Chromosome Location | chr3:143789028-143789029 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1025984 | 0.85[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap] |
rs10513235 | 1.00[GIH][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap] |
rs11924473 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13067695 | 0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs13068298 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs13078840 | 1.00[GIH][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap] |
rs13081286 | 0.85[CHB][hapmap] |
rs13086088 | 0.85[CHB][hapmap] |
rs13091882 | 0.81[EUR][1000 genomes] |
rs1466941 | 0.93[GIH][hapmap] |
rs16854884 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs16854886 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1961542 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1979910 | 0.86[GIH][hapmap] |
rs2164554 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs2370171 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs34379944 | 0.80[ASN][1000 genomes] |
rs34639473 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs34730687 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35629416 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs35788195 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs35796781 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs35887108 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs35959290 | 0.81[ASN][1000 genomes] |
rs56196484 | 0.90[ASN][1000 genomes] |
rs58251824 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62268458 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs62269933 | 0.85[EUR][1000 genomes] |
rs6440210 | 0.93[GIH][hapmap] |
rs6767236 | 0.90[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6782024 | 0.80[EUR][1000 genomes] |
rs6784938 | 0.82[EUR][1000 genomes] |
rs6786460 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6804060 | 0.84[CEU][hapmap];0.85[GIH][hapmap];0.84[EUR][1000 genomes] |
rs7610378 | 0.90[GIH][hapmap] |
rs7621079 | 0.81[EUR][1000 genomes] |
rs7621093 | 0.81[EUR][1000 genomes] |
rs7634145 | 0.85[CHB][hapmap] |
rs7637912 | 0.85[CHB][hapmap] |
rs7646187 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs7653331 | 0.82[EUR][1000 genomes] |
rs951865 | 0.81[EUR][1000 genomes] |
rs989665 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
2 | esv3365190 | chr3:143642195-143925886 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
3 | nsv591922 | chr3:143645242-143825439 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | nsv1010117 | chr3:143750590-144093775 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv536748 | chr3:143750590-144093775 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv877569 | chr3:143762420-143825439 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1010213 | chr3:143775358-143863149 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv591923 | chr3:143776096-143862350 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv591924 | chr3:143776096-143864780 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | nsv1008414 | chr3:143779087-143853396 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:143788600-143789600 | Weak transcription | HSMMtube | muscle |