Variant report

Variant	rs56196484
Chromosome Location	chr3:143786160-143786161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1025984	0.81[ASN][1000 genomes]
rs1075113	0.81[EUR][1000 genomes]
rs10935505	0.81[EUR][1000 genomes]
rs11914731	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11924473	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13081286	0.81[ASN][1000 genomes]
rs13086088	0.80[ASN][1000 genomes]
rs13091882	0.84[EUR][1000 genomes]
rs1530477	0.81[EUR][1000 genomes]
rs1530478	0.81[EUR][1000 genomes]
rs16854816	0.80[ASN][1000 genomes]
rs16854819	0.80[ASN][1000 genomes]
rs1867608	0.81[ASN][1000 genomes]
rs1867609	0.81[ASN][1000 genomes]
rs1898265	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2011080	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2053211	0.81[EUR][1000 genomes]
rs34372603	0.80[ASN][1000 genomes]
rs34379944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35067746	0.82[ASN][1000 genomes]
rs35309714	0.80[ASN][1000 genomes]
rs35649888	0.81[ASN][1000 genomes]
rs35885310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4527375	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4561830	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4611822	0.81[ASN][1000 genomes]
rs4613453	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4616638	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58251824	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59768870	0.80[ASN][1000 genomes]
rs60676654	0.80[ASN][1000 genomes]
rs62269895	0.81[ASN][1000 genomes]
rs6440212	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6766544	0.80[ASN][1000 genomes]
rs6766685	0.80[ASN][1000 genomes]
rs6767236	0.86[EUR][1000 genomes]
rs6769910	0.80[ASN][1000 genomes]
rs6779321	0.80[ASN][1000 genomes]
rs6782024	0.82[EUR][1000 genomes]
rs6783089	0.80[ASN][1000 genomes]
rs6784938	0.82[EUR][1000 genomes]
rs6786460	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6791078	0.80[ASN][1000 genomes]
rs6795008	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6796460	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6804060	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7611326	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7621079	0.81[EUR][1000 genomes]
rs7621093	0.81[EUR][1000 genomes]
rs7634145	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7637912	0.81[ASN][1000 genomes]
rs7639366	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7642551	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7649614	0.90[ASN][1000 genomes]
rs7650145	0.86[AMR][1000 genomes]
rs7650172	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7653331	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs920159	0.81[ASN][1000 genomes]
rs920968	0.81[EUR][1000 genomes]
rs951865	0.82[EUR][1000 genomes]
rs9755502	0.82[ASN][1000 genomes]
rs9755515	0.81[ASN][1000 genomes]
rs989665	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877569	chr3:143762420-143825439	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1010213	chr3:143775358-143863149	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv591923	chr3:143776096-143862350	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv591924	chr3:143776096-143864780	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1008414	chr3:143779087-143853396	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143775400-143788400	Weak transcription	HSMMtube	muscle
2	chr3:143785800-143788600	Weak transcription	HSMM	muscle

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