Variant report

Variant	rs6767236
Chromosome Location	chr3:143758399-143758400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143690493..143693318-chr3:143755857..143758404,2	K562	blood:
2	chr3:143749383..143753486-chr3:143754675..143758635,4	K562	blood:
3	chr3:143738952..143741203-chr3:143757677..143760166,2	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1025984	1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.91[ASN][1000 genomes]
rs10513235	1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs11914731	0.89[ASN][1000 genomes]
rs11924473	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13067695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068298	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078840	1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs13081286	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs13086088	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs13091882	0.87[EUR][1000 genomes]
rs1466941	0.93[GIH][hapmap];0.80[TSI][hapmap]
rs1530477	0.85[EUR][1000 genomes]
rs1530478	0.85[EUR][1000 genomes]
rs16854816	0.90[ASN][1000 genomes]
rs16854819	0.90[ASN][1000 genomes]
rs16854884	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16854886	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867608	0.91[ASN][1000 genomes]
rs1867609	0.91[ASN][1000 genomes]
rs1898265	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1961542	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979910	0.86[GIH][hapmap];0.88[TSI][hapmap]
rs2011080	0.90[ASN][1000 genomes]
rs2164554	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2370171	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372603	0.90[ASN][1000 genomes]
rs34379944	0.86[EUR][1000 genomes]
rs34683397	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34730687	0.85[EUR][1000 genomes]
rs35067746	0.90[ASN][1000 genomes]
rs35193361	0.95[ASN][1000 genomes]
rs35309714	0.90[ASN][1000 genomes]
rs35629416	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35649888	0.89[ASN][1000 genomes]
rs35788195	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35796781	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35885310	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35887108	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35959290	0.99[ASN][1000 genomes]
rs4527375	0.90[ASN][1000 genomes]
rs4561830	0.90[ASN][1000 genomes]
rs4611822	0.91[ASN][1000 genomes]
rs4613453	0.90[ASN][1000 genomes]
rs4616638	0.90[ASN][1000 genomes]
rs56196484	0.86[EUR][1000 genomes]
rs58251824	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59768870	0.88[ASN][1000 genomes]
rs60367530	0.95[ASN][1000 genomes]
rs60676654	0.90[ASN][1000 genomes]
rs62268458	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62269895	0.91[ASN][1000 genomes]
rs6440210	0.93[GIH][hapmap];0.91[TSI][hapmap]
rs6440212	0.90[ASN][1000 genomes]
rs6766544	0.90[ASN][1000 genomes]
rs6766685	0.90[ASN][1000 genomes]
rs6769910	0.90[ASN][1000 genomes]
rs6778627	0.88[ASN][1000 genomes]
rs6779321	0.90[ASN][1000 genomes]
rs6782024	0.87[EUR][1000 genomes]
rs6783089	0.90[ASN][1000 genomes]
rs6784938	0.89[EUR][1000 genomes]
rs6786460	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs6791078	0.90[ASN][1000 genomes]
rs6795008	0.88[ASN][1000 genomes]
rs6796460	0.90[ASN][1000 genomes]
rs6804060	0.95[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs7610378	0.90[GIH][hapmap];0.91[TSI][hapmap]
rs7611326	0.89[ASN][1000 genomes]
rs7621079	0.87[EUR][1000 genomes]
rs7621093	0.87[EUR][1000 genomes]
rs7634145	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7637912	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7639366	0.89[ASN][1000 genomes]
rs7642551	0.90[ASN][1000 genomes]
rs7642774	0.88[ASN][1000 genomes]
rs7646187	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7649614	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7650145	0.81[ASN][1000 genomes]
rs7650172	0.89[ASN][1000 genomes]
rs7653331	0.88[EUR][1000 genomes]
rs920159	0.91[ASN][1000 genomes]
rs951865	0.87[EUR][1000 genomes]
rs9755502	0.88[ASN][1000 genomes]
rs9755515	0.87[ASN][1000 genomes]
rs989665	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6767236	C3orf58	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143754600-143761000	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143755800-143759400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:143758200-143758600	Enhancers	HSMMtube	muscle
4	chr3:143758200-143758800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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