Variant report

Variant	rs35086353
Chromosome Location	chr19:56890093-56890094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:56888312..56892282-chr19:56896043..56899237,5	K562	blood:

Variant related genes	Relation type
ENSG00000267192	Chromatin interaction
ENSG00000267781	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs14049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33949495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34157829	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34175124	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754589	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34838744	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35117763	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35570078	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36029220	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56880600-56890600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:56880600-56890800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr19:56880600-56891200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:56880600-56891400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:56880800-56890600	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr19:56880800-56890800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr19:56881000-56890800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:56881000-56891000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr19:56881200-56892200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:56881200-56904000	ZNF genes & repeats	Liver	Liver
11	chr19:56881400-56890600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr19:56881400-56893000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:56881800-56890800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr19:56881800-56890800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:56882000-56890200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr19:56882000-56890600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:56882000-56890800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:56882200-56890200	Strong transcription	Brain Germinal Matrix	brain
19	chr19:56882200-56891200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:56883400-56890200	Strong transcription	Fetal Brain Male	brain
21	chr19:56883400-56890200	ZNF genes & repeats	Ovary	ovary
22	chr19:56883400-56890400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr19:56883400-56890600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:56883400-56890800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr19:56883400-56891000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:56883400-56891200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr19:56883600-56890600	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr19:56884000-56890600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:56884000-56892600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr19:56884400-56891000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr19:56884600-56892400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr19:56884800-56892400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr19:56885000-56890400	ZNF genes & repeats	HSMM	muscle
34	chr19:56885000-56890400	ZNF genes & repeats	NHDF-Ad	bronchial
35	chr19:56885000-56890600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
36	chr19:56885000-56890800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr19:56885000-56890800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr19:56885000-56891000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:56885400-56890200	ZNF genes & repeats	NH-A	brain
40	chr19:56885600-56890600	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr19:56885800-56891000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr19:56886000-56890600	Strong transcription	Fetal Stomach	stomach
43	chr19:56886400-56890400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
44	chr19:56887000-56890600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr19:56887200-56891200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr19:56887600-56890600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:56887800-56890400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr19:56888000-56890200	ZNF genes & repeats	Fetal Brain Female	brain
49	chr19:56888200-56890800	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr19:56888400-56890200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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