Variant report

Variant	rs35117763
Chromosome Location	chr19:56878579-56878580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs14049	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33949495	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34157829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175124	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34422966	0.87[ASN][1000 genomes]
rs34587718	0.87[ASN][1000 genomes]
rs34639383	0.87[ASN][1000 genomes]
rs34741801	0.87[ASN][1000 genomes]
rs34754589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34838744	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35086353	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35570078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35638120	0.87[ASN][1000 genomes]
rs35701274	0.87[ASN][1000 genomes]
rs36029220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71352884	0.87[ASN][1000 genomes]
rs7409060	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56872200-56879400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:56873800-56879000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr19:56873800-56879200	Weak transcription	Left Ventricle	heart
4	chr19:56875000-56878800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:56875600-56878800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:56876400-56879000	Weak transcription	Brain Hippocampus Middle	brain
7	chr19:56876600-56879000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr19:56876800-56879000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr19:56877200-56879000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr19:56877400-56878800	Weak transcription	Liver	Liver
11	chr19:56877400-56879200	Weak transcription	Ovary	ovary
12	chr19:56877600-56879000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr19:56878400-56879000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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