Variant report

Variant	rs35089407
Chromosome Location	chr7:78908950-78908951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11974299	0.89[ASN][1000 genomes]
rs11977807	0.81[ASN][1000 genomes]
rs12111848	0.89[ASN][1000 genomes]
rs12666813	0.89[ASN][1000 genomes]
rs12669047	0.89[ASN][1000 genomes]
rs1528267	0.93[ASN][1000 genomes]
rs1581655	0.89[ASN][1000 genomes]
rs17152257	0.89[ASN][1000 genomes]
rs28502577	0.88[ASN][1000 genomes]
rs28585047	0.83[ASN][1000 genomes]
rs59762738	0.96[ASN][1000 genomes]
rs62458966	0.88[ASN][1000 genomes]
rs62460858	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6943406	0.86[ASN][1000 genomes]
rs6960937	0.86[ASN][1000 genomes]
rs848809	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78896800-78911600	Weak transcription	Aorta	Aorta
2	chr7:78899400-78909600	Weak transcription	NHLF	lung
3	chr7:78902400-78910200	Weak transcription	Osteobl	bone
4	chr7:78902600-78911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:78907600-78910800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:78907800-78911600	Weak transcription	Psoas Muscle	Psoas
7	chr7:78908000-78910400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:78908000-78911600	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:78908200-78910400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:78908600-78911600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:78908600-78911600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:78908800-78909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:78908800-78910000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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