Variant report

Variant	rs28502577
Chromosome Location	chr7:78896212-78896213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10253536	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11974299	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11977807	0.92[EUR][1000 genomes]
rs12111848	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12666081	0.92[EUR][1000 genomes]
rs12666813	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12669047	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528267	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1581655	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17152257	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2159708	0.87[EUR][1000 genomes]
rs28585047	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35089407	0.88[ASN][1000 genomes]
rs4236600	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58064011	0.92[EUR][1000 genomes]
rs59762738	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62458960	0.91[EUR][1000 genomes]
rs62458961	0.91[EUR][1000 genomes]
rs62458963	0.91[EUR][1000 genomes]
rs62458966	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62458967	0.91[EUR][1000 genomes]
rs62460858	0.95[ASN][1000 genomes]
rs6943406	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6960937	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs848811	0.89[EUR][1000 genomes]
rs848814	0.87[EUR][1000 genomes]
rs848815	0.87[EUR][1000 genomes]
rs848816	0.87[EUR][1000 genomes]
rs848817	0.87[EUR][1000 genomes]
rs848818	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78888400-78898000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78894200-78896600	Weak transcription	Aorta	Aorta
3	chr7:78894600-78898400	Weak transcription	NHLF	lung
4	chr7:78896200-78896400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links