Variant report

Variant	rs10253536
Chromosome Location	chr7:78894075-78894076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11974299	0.90[EUR][1000 genomes]
rs11977807	0.88[EUR][1000 genomes]
rs12111848	0.91[EUR][1000 genomes]
rs12666081	0.88[EUR][1000 genomes]
rs12666813	0.93[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs12669047	0.90[EUR][1000 genomes]
rs1528267	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes]
rs1581655	0.90[EUR][1000 genomes]
rs17152257	1.00[CEU][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs2159708	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28502577	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4236600	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58064011	0.88[EUR][1000 genomes]
rs59762738	0.93[EUR][1000 genomes]
rs62458960	0.89[EUR][1000 genomes]
rs62458961	0.89[EUR][1000 genomes]
rs62458963	0.89[EUR][1000 genomes]
rs62458966	0.90[EUR][1000 genomes]
rs62458967	0.89[EUR][1000 genomes]
rs62460858	0.81[ASN][1000 genomes]
rs6943406	0.90[EUR][1000 genomes]
rs6960937	0.90[EUR][1000 genomes]
rs7782460	0.82[YRI][hapmap]
rs848809	0.85[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs848811	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs848813	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes]
rs848814	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs848815	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs848816	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs848817	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs848818	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78888400-78898000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78894000-78894200	Enhancers	Aorta	Aorta
3	chr7:78894000-78894400	Enhancers	Psoas Muscle	Psoas

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