Variant report

Variant	rs62458967
Chromosome Location	chr7:78949560-78949561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78949110..78950996-chr7:78951230..78952758,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10253536	0.89[EUR][1000 genomes]
rs11974299	0.94[EUR][1000 genomes]
rs11977807	0.92[EUR][1000 genomes]
rs12111848	0.93[EUR][1000 genomes]
rs12666081	0.92[EUR][1000 genomes]
rs12666813	0.91[EUR][1000 genomes]
rs12669047	0.94[EUR][1000 genomes]
rs1528267	0.93[EUR][1000 genomes]
rs1581655	0.94[EUR][1000 genomes]
rs17152257	0.94[EUR][1000 genomes]
rs28502577	0.91[EUR][1000 genomes]
rs4236600	0.90[EUR][1000 genomes]
rs58064011	0.92[EUR][1000 genomes]
rs59762738	0.91[EUR][1000 genomes]
rs62458960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458966	0.94[EUR][1000 genomes]
rs62458997	0.84[AMR][1000 genomes]
rs62459000	0.84[AMR][1000 genomes]
rs62459009	0.80[AMR][1000 genomes]
rs6943406	0.94[EUR][1000 genomes]
rs6960937	0.94[EUR][1000 genomes]
rs848811	0.85[EUR][1000 genomes]
rs848818	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78947400-78951000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78947400-78955200	Weak transcription	Aorta	Aorta
3	chr7:78947400-78956600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:78949000-78949600	Enhancers	A549	lung
5	chr7:78949200-78950200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:78949400-78954800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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