Variant report

Variant	rs35095184
Chromosome Location	chr4:55890410-55890411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13105577	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13111365	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34003005	0.80[EUR][1000 genomes]
rs34222805	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34728762	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35699617	0.98[AFR][1000 genomes]
rs56180527	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56404029	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62306413	0.86[EUR][1000 genomes]
rs62306414	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71599662	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71599665	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71599666	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55884000-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:55884200-55891000	Weak transcription	HMEC	breast
3	chr4:55885600-55890600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:55885600-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:55886400-55893800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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