Variant report

Variant	rs71599662
Chromosome Location	chr4:55885742-55885743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13105577	0.80[EUR][1000 genomes]
rs34222805	0.81[EUR][1000 genomes]
rs34728762	0.80[EUR][1000 genomes]
rs35095184	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55883400-55886200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:55884000-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:55884200-55891000	Weak transcription	HMEC	breast
4	chr4:55884600-55886000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:55884800-55887800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:55885000-55885800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:55885000-55886000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:55885000-55886000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:55885000-55886400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr4:55885200-55885800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:55885200-55885800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:55885200-55886000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:55885200-55887000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:55885400-55885800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:55885600-55885800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:55885600-55890600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:55885600-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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