Variant report

Variant	rs35106232
Chromosome Location	chr8:95872795-95872796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95834884..95837235-chr8:95872737..95874453,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10091683	0.87[ASN][1000 genomes]
rs12550765	0.86[ASN][1000 genomes]
rs4735310	0.87[ASN][1000 genomes]
rs4735312	0.88[ASN][1000 genomes]
rs6471497	0.87[ASN][1000 genomes]
rs6471498	0.88[ASN][1000 genomes]
rs6998921	0.81[ASN][1000 genomes]
rs7839728	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95836800-95874600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:95837000-95905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:95837400-95898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:95838200-95905600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:95838800-95876000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:95839400-95904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:95839600-95873400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:95839600-95873400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:95840600-95873000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:95847400-95873000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:95847400-95890800	Weak transcription	Stomach Mucosa	stomach
12	chr8:95848400-95873000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:95849800-95873000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:95851600-95874200	Weak transcription	Pancreas	Pancrea
15	chr8:95855600-95873800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:95855600-95874200	Strong transcription	Fetal Thymus	thymus
17	chr8:95855800-95873000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr8:95860000-95873000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr8:95860600-95873000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr8:95861000-95881400	Strong transcription	GM12878-XiMat	blood
21	chr8:95861400-95873000	Strong transcription	Primary T cells from cord blood	blood
22	chr8:95861400-95874000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr8:95861400-95874200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:95862200-95873000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:95863200-95873000	Strong transcription	Brain Anterior Caudate	brain
26	chr8:95863200-95883000	Weak transcription	Small Intestine	intestine
27	chr8:95864000-95875800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:95864200-95884800	Strong transcription	Fetal Stomach	stomach
29	chr8:95864800-95874600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:95865600-95873400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr8:95868600-95874600	Weak transcription	Brain Angular Gyrus	brain
32	chr8:95869200-95874400	Weak transcription	HUVEC	blood vessel
33	chr8:95870000-95874000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:95870000-95874000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:95870000-95875400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:95870000-95885200	Weak transcription	Brain Substantia Nigra	brain
37	chr8:95870000-95889800	Weak transcription	Esophagus	oesophagus
38	chr8:95870200-95874600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:95870200-95877400	Weak transcription	NHEK	skin
40	chr8:95870200-95878600	Weak transcription	Spleen	Spleen
41	chr8:95870200-95885000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr8:95870200-95885000	Weak transcription	Psoas Muscle	Psoas
43	chr8:95870200-95905200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr8:95870400-95877400	Weak transcription	HepG2	liver
45	chr8:95870600-95874400	Weak transcription	NH-A	brain
46	chr8:95870600-95874600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:95870600-95878000	Weak transcription	NHDF-Ad	bronchial
48	chr8:95870600-95905600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:95871000-95875200	Weak transcription	Colonic Mucosa	Colon
50	chr8:95871000-95886200	Weak transcription	Fetal Brain Male	brain

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