Variant report

Variant	rs7839728
Chromosome Location	chr8:95857890-95857891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95856096..95858361-chr8:95893354..95895940,2	MCF-7	breast:
2	chr8:95856905..95859854-chr8:95889199..95892005,2	K562	blood:
3	chr8:95855860..95860048-chr8:95905207..95908854,5	K562	blood:
4	chr8:95833838..95836965-chr8:95856644..95859551,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156170	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10091683	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956929	0.91[EUR][1000 genomes]
rs11988818	0.84[ASN][1000 genomes]
rs12550765	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677346	0.93[EUR][1000 genomes]
rs2278891	0.91[EUR][1000 genomes]
rs2924477	0.81[EUR][1000 genomes]
rs2956216	0.86[EUR][1000 genomes]
rs3019182	0.88[EUR][1000 genomes]
rs35106232	0.87[ASN][1000 genomes]
rs4076061	0.84[ASN][1000 genomes]
rs4735310	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735312	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735328	0.93[EUR][1000 genomes]
rs477653	0.88[EUR][1000 genomes]
rs5002591	0.82[ASN][1000 genomes]
rs535322	0.88[EUR][1000 genomes]
rs550564	0.88[EUR][1000 genomes]
rs551270	0.86[EUR][1000 genomes]
rs61537129	0.88[EUR][1000 genomes]
rs6471497	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471498	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471500	0.92[EUR][1000 genomes]
rs683832	0.87[EUR][1000 genomes]
rs6998921	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005317	0.92[EUR][1000 genomes]
rs7013163	0.88[EUR][1000 genomes]
rs7817845	0.84[ASN][1000 genomes]
rs9643348	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95836800-95866800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:95836800-95874600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:95837000-95905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:95837400-95898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:95837600-95869800	Weak transcription	Psoas Muscle	Psoas
6	chr8:95838200-95905600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:95838600-95860400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:95838800-95876000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:95839400-95859600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:95839400-95872200	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr8:95839400-95872400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:95839400-95872400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:95839400-95872400	Strong transcription	Dnd41	blood
14	chr8:95839400-95872600	Strong transcription	Liver	Liver
15	chr8:95839400-95872600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr8:95839400-95904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:95839600-95858000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr8:95839600-95863200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr8:95839600-95873400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:95839600-95873400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:95840200-95860600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:95840600-95860600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:95840600-95873000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:95840800-95860600	Strong transcription	Adipose Nuclei	Adipose
25	chr8:95843800-95858600	Weak transcription	Small Intestine	intestine
26	chr8:95844000-95859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:95845200-95858200	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr8:95845200-95860800	Strong transcription	Fetal Intestine Large	intestine
29	chr8:95845600-95860600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:95845600-95862800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:95845800-95872600	Strong transcription	Placenta	Placenta
32	chr8:95846000-95858200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:95846400-95858200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr8:95846400-95858600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:95847400-95873000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:95847400-95890800	Weak transcription	Stomach Mucosa	stomach
37	chr8:95848400-95859400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:95848400-95873000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:95848800-95869000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:95849800-95859600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:95849800-95860400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr8:95849800-95862800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:95849800-95872200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:95849800-95873000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:95850000-95859600	Strong transcription	Fetal Muscle Leg	muscle
46	chr8:95850000-95859600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:95850000-95859600	Strong transcription	Osteobl	bone
48	chr8:95850200-95859600	Strong transcription	Left Ventricle	heart
49	chr8:95850200-95860600	Strong transcription	Fetal Intestine Small	intestine
50	chr8:95850200-95860600	Strong transcription	Fetal Stomach	stomach

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