Variant report

Variant	rs35108899
Chromosome Location	chr6:54673098-54673099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13192654	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13220607	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17682062	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34317450	0.82[EUR][1000 genomes]
rs35332422	0.82[EUR][1000 genomes]
rs71560861	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71560863	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71560865	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54669800-54673400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:54670600-54674000	Weak transcription	Fetal Heart	heart
3	chr6:54670800-54673400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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