Variant report
| Variant | rs71560861 |
|---|---|
| Chromosome Location | chr6:54645543-54645544 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:54644390..54646954-chr6:54709633..54712699,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs12196439 | 1.00[ASN][1000 genomes] |
| rs12207828 | 1.00[ASN][1000 genomes] |
| rs13190743 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13192654 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13212537 | 1.00[ASN][1000 genomes] |
| rs13218354 | 1.00[ASN][1000 genomes] |
| rs13220607 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1395638 | 1.00[ASN][1000 genomes] |
| rs1395639 | 1.00[ASN][1000 genomes] |
| rs17682062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs239782 | 1.00[ASN][1000 genomes] |
| rs239784 | 1.00[ASN][1000 genomes] |
| rs239785 | 1.00[ASN][1000 genomes] |
| rs34317450 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34784567 | 1.00[ASN][1000 genomes] |
| rs35108899 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35242257 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35332422 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35355591 | 1.00[ASN][1000 genomes] |
| rs35601036 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35776136 | 1.00[ASN][1000 genomes] |
| rs6929628 | 1.00[ASN][1000 genomes] |
| rs6930882 | 1.00[ASN][1000 genomes] |
| rs6936719 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71560863 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71560865 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71560870 | 1.00[ASN][1000 genomes] |
| rs71560871 | 1.00[ASN][1000 genomes] |
| rs71560872 | 1.00[ASN][1000 genomes] |
| rs9464152 | 1.00[ASN][1000 genomes] |
| rs9474993 | 1.00[ASN][1000 genomes] |
| rs9474994 | 1.00[ASN][1000 genomes] |
| rs9474998 | 1.00[ASN][1000 genomes] |
| rs9474999 | 1.00[ASN][1000 genomes] |
| rs9475000 | 1.00[ASN][1000 genomes] |
| rs9475047 | 1.00[ASN][1000 genomes] |
| rs9475049 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv885902 | chr6:54588069-54656673 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
