Variant report

Variant	rs6930882
Chromosome Location	chr6:54638258-54638259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484990	0.81[EUR][1000 genomes]
rs12196439	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207828	1.00[ASN][1000 genomes]
rs13190743	1.00[ASN][1000 genomes]
rs13192654	1.00[ASN][1000 genomes]
rs13212537	1.00[ASN][1000 genomes]
rs13218354	1.00[ASN][1000 genomes]
rs13220607	1.00[ASN][1000 genomes]
rs1395638	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395639	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17682062	1.00[ASN][1000 genomes]
rs239782	1.00[ASN][1000 genomes]
rs239784	1.00[ASN][1000 genomes]
rs239785	1.00[ASN][1000 genomes]
rs34317450	1.00[ASN][1000 genomes]
rs34784567	1.00[ASN][1000 genomes]
rs35242257	1.00[ASN][1000 genomes]
rs35332422	1.00[ASN][1000 genomes]
rs35355591	1.00[ASN][1000 genomes]
rs35601036	1.00[ASN][1000 genomes]
rs35776136	1.00[ASN][1000 genomes]
rs6929628	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936719	1.00[ASN][1000 genomes]
rs71560861	1.00[ASN][1000 genomes]
rs71560863	1.00[ASN][1000 genomes]
rs71560865	1.00[ASN][1000 genomes]
rs71560870	1.00[ASN][1000 genomes]
rs71560871	1.00[ASN][1000 genomes]
rs71560872	1.00[ASN][1000 genomes]
rs9464152	1.00[ASN][1000 genomes]
rs9474993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474994	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474998	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474999	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475000	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475047	1.00[ASN][1000 genomes]
rs9475049	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54637000-54640400	Weak transcription	Fetal Heart	heart

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