Variant report

Variant	rs35115631
Chromosome Location	chr4:148755571-148755572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10004850	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007231	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10018820	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10018903	1.00[ASN][1000 genomes]
rs10021936	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10022691	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10023057	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10025684	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029385	0.89[ASN][1000 genomes]
rs10030513	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1013842	0.96[EUR][1000 genomes]
rs10461235	0.86[EUR][1000 genomes]
rs11099670	0.96[EUR][1000 genomes]
rs11733409	0.95[EUR][1000 genomes]
rs12498257	0.93[EUR][1000 genomes]
rs12511313	0.96[EUR][1000 genomes]
rs12641291	1.00[ASN][1000 genomes]
rs12647314	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13116821	0.91[ASN][1000 genomes]
rs13129747	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148956	0.95[EUR][1000 genomes]
rs13434396	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1347596	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1436489	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1436490	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1469865	0.96[EUR][1000 genomes]
rs1469867	0.95[EUR][1000 genomes]
rs17023919	1.00[ASN][1000 genomes]
rs17023928	1.00[ASN][1000 genomes]
rs17023995	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28662484	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4240338	0.82[ASN][1000 genomes]
rs4240339	0.89[ASN][1000 genomes]
rs4419463	0.82[ASN][1000 genomes]
rs4835101	0.95[EUR][1000 genomes]
rs4835461	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4835463	0.96[EUR][1000 genomes]
rs4835464	0.83[EUR][1000 genomes]
rs62330695	0.83[ASN][1000 genomes]
rs6535565	0.96[EUR][1000 genomes]
rs66488204	1.00[ASN][1000 genomes]
rs6839440	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6846526	0.95[EUR][1000 genomes]
rs6846899	0.91[EUR][1000 genomes]
rs6853296	0.92[EUR][1000 genomes]
rs71616571	0.93[EUR][1000 genomes]
rs7654433	0.95[EUR][1000 genomes]
rs7655236	0.83[ASN][1000 genomes]
rs7664567	0.95[EUR][1000 genomes]
rs7666127	0.91[ASN][1000 genomes]
rs893024	0.89[EUR][1000 genomes]
rs9995896	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9996108	1.00[ASN][1000 genomes]
rs9996209	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148734600-148761000	Weak transcription	Fetal Kidney	kidney
2	chr4:148737200-148758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:148737800-148757000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:148737800-148782200	Weak transcription	Thymus	Thymus
5	chr4:148743200-148782200	Weak transcription	Fetal Intestine Large	intestine
6	chr4:148746400-148768000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:148749400-148758000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:148751400-148757200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:148751400-148776000	Weak transcription	Fetal Stomach	stomach
10	chr4:148752400-148761200	Weak transcription	Psoas Muscle	Psoas
11	chr4:148752600-148756000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:148753000-148756000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:148753200-148756000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:148753200-148756000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:148753200-148756000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:148753200-148756400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:148753200-148763600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:148753200-148765800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:148753200-148767800	Weak transcription	Small Intestine	intestine
20	chr4:148753400-148756400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:148753400-148756600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:148753400-148757200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:148753400-148757200	Weak transcription	Osteobl	bone
24	chr4:148753400-148757600	Weak transcription	Fetal Heart	heart
25	chr4:148753400-148758600	Weak transcription	Ovary	ovary
26	chr4:148753400-148760400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:148753400-148760800	Weak transcription	Aorta	Aorta
28	chr4:148753400-148760800	Weak transcription	NH-A	brain
29	chr4:148753400-148765800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:148753400-148782000	Weak transcription	Gastric	stomach
31	chr4:148753600-148756200	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:148753600-148756400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:148753600-148756400	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:148753600-148760400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr4:148753800-148756000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:148753800-148757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:148753800-148757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:148753800-148761200	Weak transcription	Right Atrium	heart
39	chr4:148754000-148755800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr4:148754000-148766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:148754200-148756200	Weak transcription	HSMMtube	muscle
42	chr4:148754200-148756600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:148754400-148762200	Weak transcription	HUVEC	blood vessel
44	chr4:148754400-148769000	Weak transcription	NHLF	lung
45	chr4:148754600-148756200	Weak transcription	NHDF-Ad	bronchial
46	chr4:148754600-148764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:148754800-148756400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:148754800-148763600	Weak transcription	HMEC	breast
49	chr4:148755000-148755600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:148755000-148755600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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