Variant report

Variant	rs7655236
Chromosome Location	chr4:148742957-148742958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148735688..148738679-chr4:148741409..148744100,2	MCF-7	breast:
2	chr4:148722709..148724828-chr4:148742107..148743929,2	MCF-7	breast:
3	chr4:148629212..148629987-chr4:148742603..148743764,4	MCF-7	breast:
4	chr4:148605030..148606697-chr4:148741931..148744308,2	MCF-7	breast:
5	chr4:148643022..148644770-chr4:148741282..148743199,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164169	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10004850	0.83[ASN][1000 genomes]
rs10005192	0.83[EUR][1000 genomes]
rs10018903	0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10025684	0.82[ASN][1000 genomes]
rs10029385	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10030513	0.82[ASN][1000 genomes]
rs10519917	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11724795	0.82[CEU][hapmap]
rs11935450	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11935510	0.90[EUR][1000 genomes]
rs11935620	0.90[EUR][1000 genomes]
rs11940379	0.90[EUR][1000 genomes]
rs12641291	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12647314	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12650219	0.85[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13116821	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13129747	0.83[ASN][1000 genomes]
rs1436489	0.90[ASN][1000 genomes]
rs1436490	0.83[ASN][1000 genomes]
rs17023870	0.90[EUR][1000 genomes]
rs17023919	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17023928	0.82[CEU][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17023995	0.83[ASN][1000 genomes]
rs2043644	0.85[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28662484	0.80[ASN][1000 genomes]
rs35115631	0.83[ASN][1000 genomes]
rs4240338	0.85[CEU][hapmap];0.92[CHB][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4240339	0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4419463	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66488204	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6839440	0.86[ASN][1000 genomes]
rs6846899	0.82[MEX][hapmap]
rs7666127	0.81[ASN][1000 genomes]
rs893022	0.85[CEU][hapmap]
rs9995896	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9996108	0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148721800-148744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:148732600-148744000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:148734600-148761000	Weak transcription	Fetal Kidney	kidney
4	chr4:148737000-148747200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:148737200-148758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:148737600-148746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:148737600-148747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:148737600-148747000	Weak transcription	Gastric	stomach
9	chr4:148737600-148750400	Weak transcription	Lung	lung
10	chr4:148737600-148751000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:148737800-148751400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:148737800-148755400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:148737800-148757000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:148737800-148782200	Weak transcription	Thymus	Thymus
15	chr4:148738600-148750400	Weak transcription	Placenta	Placenta
16	chr4:148741000-148744200	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:148741000-148744600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:148741200-148743400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:148741200-148744200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:148741400-148754000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:148741600-148743400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:148741800-148743600	Enhancers	HMEC	breast
23	chr4:148741800-148744400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr4:148742000-148744000	Enhancers	Ovary	ovary
25	chr4:148742000-148744400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:148742000-148744400	Enhancers	Right Atrium	heart
27	chr4:148742000-148744400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr4:148742000-148744600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:148742000-148745000	Enhancers	Fetal Muscle Leg	muscle
30	chr4:148742000-148745000	Enhancers	Psoas Muscle	Psoas
31	chr4:148742200-148743200	Enhancers	Esophagus	oesophagus
32	chr4:148742200-148743400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:148742200-148743600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr4:148742200-148743600	Enhancers	Brain Anterior Caudate	brain
35	chr4:148742200-148743600	Enhancers	HUVEC	blood vessel
36	chr4:148742200-148743800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:148742200-148743800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr4:148742200-148744000	Enhancers	Aorta	Aorta
39	chr4:148742200-148744000	Enhancers	NHLF	lung
40	chr4:148742200-148744200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr4:148742200-148744200	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr4:148742200-148744200	Enhancers	NHDF-Ad	bronchial
43	chr4:148742200-148744600	Enhancers	HSMM	muscle
44	chr4:148742200-148744800	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:148742200-148744800	Enhancers	HSMMtube	muscle
46	chr4:148742200-148746600	Enhancers	Pancreas	Pancrea
47	chr4:148742400-148743000	Enhancers	NH-A	brain
48	chr4:148742400-148743200	Flanking Active TSS	NHEK	skin
49	chr4:148742400-148743600	Enhancers	Fetal Intestine Small	intestine
50	chr4:148742400-148743600	Enhancers	Fetal Stomach	stomach

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