Variant report

Variant	rs35116476
Chromosome Location	chr15:75075505-75075506
allele	-/AAGC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
2	chr15:75043196..75045391-chr15:75075402..75077625,2	K562	blood:
3	chr15:75073135..75075746-chr15:75163972..75165852,2	K562	blood:
4	chr15:74927868..74930219-chr15:75074349..75076958,3	MCF-7	breast:
5	chr15:75074174..75075858-chr15:75112738..75114767,2	MCF-7	breast:
6	chr15:75075306..75077471-chr15:75113085..75115871,2	K562	blood:
7	chr15:75075073..75076597-chr15:75243005..75244574,2	MCF-7	breast:
8	chr15:75074126..75076948-chr15:75116903..75120530,4	MCF-7	breast:
9	chr15:75073924..75075938-chr17:37855960..37858891,2	MCF-7	breast:
10	chr15:75072788..75075776-chr15:75181274..75184204,2	K562	blood:
11	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
12	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
13	chr15:75073739..75076026-chr15:75228940..75231737,2	MCF-7	breast:
14	chr15:75074194..75076388-chr15:75195576..75199734,3	MCF-7	breast:
15	chr15:75072694..75075868-chr15:75228655..75230932,4	K562	blood:
16	chr15:75072740..75076753-chr15:75116483..75119304,4	MCF-7	breast:
17	chr15:75072694..75075672-chr15:75228478..75230738,4	K562	blood:
18	chr15:75074533..75077400-chr15:75247038..75249331,2	MCF-7	breast:
19	chr15:75074533..75077222-chr15:75090764..75094129,5	MCF-7	breast:
20	chr15:74927915..74930465-chr15:75075287..75077377,2	MCF-7	breast:
21	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
22	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
23	chr15:75065380..75067175-chr15:75075106..75076815,2	K562	blood:
24	chr15:75074806..75076876-chr15:75192504..75194161,2	K562	blood:
25	chr15:75072788..75075776-chr15:75181274..75184204,3	K562	blood:
26	chr15:74915721..74919302-chr15:75074662..75077539,3	MCF-7	breast:
27	chr15:75074461..75076806-chr15:75112062..75114585,2	K562	blood:
28	chr15:75072261..75077453-chr15:75091040..75094267,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213578	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000179151	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000141736	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv3373735	chr15:75073424-75076272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
4	esv3407516	chr15:75073449-75075972	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
5	esv2075148	chr15:75075506-75075510	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	13 gene(s)	n/a	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75073600-75076400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:75073800-75075600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:75073800-75076200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:75073800-75076200	Active TSS	Small Intestine	intestine
5	chr15:75073800-75076600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:75074000-75075600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr15:75074000-75076000	Active TSS	Primary T cells from cord blood	blood
8	chr15:75074000-75076200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr15:75074000-75076400	Active TSS	Fetal Kidney	kidney
10	chr15:75074000-75077000	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr15:75074200-75075600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:75074200-75075600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:75074200-75075600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:75074200-75075600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:75074200-75075600	Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr15:75074200-75075600	Active TSS	Muscle Satellite Cultured Cells	--
17	chr15:75074200-75075600	Active TSS	Esophagus	oesophagus
18	chr15:75074200-75075600	Active TSS	Sigmoid Colon	Sigmoid Colon
19	chr15:75074200-75075600	Active TSS	GM12878-XiMat	blood
20	chr15:75074200-75075600	Active TSS	HSMM	muscle
21	chr15:75074200-75075600	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:75074200-75075800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr15:75074200-75075800	Active TSS	Primary B cells from peripheral blood	blood
24	chr15:75074200-75075800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:75074200-75076000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr15:75074200-75076200	Active TSS	HSMMtube	muscle
27	chr15:75074200-75076800	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr15:75074200-75077000	Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr15:75074400-75075600	Active TSS	Primary monocytes fromperipheralblood	blood
30	chr15:75074400-75075600	Active TSS	Ovary	ovary
31	chr15:75074400-75075800	Active TSS	Aorta	Aorta
32	chr15:75074800-75077400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:75075000-75075600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
34	chr15:75075000-75075600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
35	chr15:75075000-75075800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:75075000-75075800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
37	chr15:75075000-75075800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
38	chr15:75075000-75076000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr15:75075000-75076000	Flanking Active TSS	Fetal Brain Male	brain
40	chr15:75075000-75076000	Flanking Active TSS	Dnd41	blood
41	chr15:75075000-75076200	Flanking Active TSS	Pancreas	Pancrea
42	chr15:75075000-75076400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:75075000-75076400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:75075000-75076400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr15:75075000-75076400	Flanking Active TSS	Placenta	Placenta
46	chr15:75075000-75076400	Flanking Active TSS	Right Ventricle	heart
47	chr15:75075000-75076400	Flanking Active TSS	NH-A	brain
48	chr15:75075000-75076600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:75075000-75076600	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr15:75075000-75076600	Flanking Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links