Variant report

Variant	rs35118879
Chromosome Location	chr1:150600680-150600681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150549047..150553046-chr1:150599453..150603954,9	MCF-7	breast:
2	chr1:150600620..150604710-chr1:150667156..150670884,6	K562	blood:
3	chr1:150600086..150604497-chr1:150798595..150803015,4	MCF-7	breast:
4	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
5	chr1:150600649..150603708-chr1:150666872..150671304,5	K562	blood:
6	chr1:150458113..150460742-chr1:150599904..150603804,4	MCF-7	breast:
7	chr1:150532182..150537720-chr1:150588719..150604935,28	MCF-7	breast:
8	chr1:150548752..150555486-chr1:150599368..150605834,15	MCF-7	breast:
9	chr1:150547986..150553838-chr1:150598744..150606232,19	K562	blood:
10	chr1:150520854..150524966-chr1:150599341..150603058,4	K562	blood:
11	chr1:150598853..150601139-chr1:150818426..150820155,2	K562	blood:
12	chr1:150531290..150540028-chr1:150591374..150603951,29	MCF-7	breast:
13	chr1:150600280..150603071-chr17:56707754..56709707,2	MCF-7	breast:
14	chr1:150600402..150602469-chr12:6642434..6645132,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203804	Chromatin interaction
ENSG00000143457	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000264508	Chromatin interaction
ENSG00000143374	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000255966	Chromatin interaction
ENSG00000143382	Chromatin interaction
ENSG00000264584	Chromatin interaction
ENSG00000111640	Chromatin interaction
ENSG00000264553	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000225996	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12733421	0.80[EUR][1000 genomes]
rs12750810	1.00[AFR][1000 genomes]
rs35048125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35392872	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150588600-150601000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:150595800-150600800	Weak transcription	Right Atrium	heart
3	chr1:150598600-150600800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:150598600-150600800	Weak transcription	Aorta	Aorta
5	chr1:150599000-150601000	Weak transcription	Pancreas	Pancrea
6	chr1:150599000-150601200	Weak transcription	Gastric	stomach
7	chr1:150599200-150601200	Weak transcription	Lung	lung
8	chr1:150599600-150601000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
9	chr1:150599800-150601000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:150599800-150601200	Weak transcription	Ovary	ovary
11	chr1:150599800-150601200	Weak transcription	Small Intestine	intestine
12	chr1:150600000-150600800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:150600000-150600800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:150600000-150600800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:150600000-150600800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:150600000-150600800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:150600000-150601000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:150600000-150601000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr1:150600000-150601000	Weak transcription	Psoas Muscle	Psoas
20	chr1:150600200-150600800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:150600200-150600800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:150600200-150600800	Enhancers	Brain Substantia Nigra	brain
23	chr1:150600200-150600800	Enhancers	Fetal Heart	heart
24	chr1:150600200-150600800	Genic enhancers	Fetal Intestine Large	intestine
25	chr1:150600200-150600800	Genic enhancers	Fetal Intestine Small	intestine
26	chr1:150600200-150600800	Enhancers	Spleen	Spleen
27	chr1:150600200-150600800	Transcr. at gene 5' and 3'	Dnd41	blood
28	chr1:150600200-150601000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:150600200-150601000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr1:150600200-150601000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr1:150600200-150601200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:150600200-150601200	Enhancers	Stomach Mucosa	stomach
33	chr1:150600200-150601200	Flanking Active TSS	NHEK	skin
34	chr1:150600200-150601400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr1:150600200-150603000	Active TSS	Right Ventricle	heart
36	chr1:150600400-150600800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr1:150600400-150600800	Enhancers	Fetal Kidney	kidney
38	chr1:150600400-150600800	Enhancers	Placenta	Placenta
39	chr1:150600400-150600800	Flanking Active TSS	HepG2	liver
40	chr1:150600400-150600800	Enhancers	NHDF-Ad	bronchial
41	chr1:150600400-150601000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:150600400-150601000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr1:150600400-150601000	Enhancers	Primary B cells from peripheral blood	blood
44	chr1:150600400-150601000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:150600400-150601000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:150600400-150601000	Flanking Active TSS	Liver	Liver
47	chr1:150600400-150601000	Enhancers	Colon Smooth Muscle	Colon
48	chr1:150600400-150601000	Enhancers	Left Ventricle	heart
49	chr1:150600400-150601000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr1:150600400-150601000	Flanking Active TSS	A549	lung

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