Variant report

Variant	rs351194
Chromosome Location	chr15:74587308-74587309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11853002	1.00[AMR][1000 genomes]
rs28362877	1.00[AMR][1000 genomes]
rs2930303	1.00[MKK][hapmap]
rs351166	1.00[AMR][1000 genomes]
rs351168	1.00[AMR][1000 genomes]
rs3743213	1.00[AMR][1000 genomes]
rs57654931	1.00[AMR][1000 genomes]
rs7162874	1.00[AMR][1000 genomes]
rs7168527	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74584400-74588000	Enhancers	Brain Germinal Matrix	brain
3	chr15:74584400-74592000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74584400-74592000	Weak transcription	Spleen	Spleen
5	chr15:74585800-74592400	Weak transcription	Fetal Brain Female	brain
6	chr15:74586000-74592200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:74587200-74587400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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